Array 1 53678-54905 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQF010000011.1 Pseudomonas aeruginosa strain PAL1.19 NODE_11_length_246365_cov_16.0707, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 53678 28 100.0 32 ............................ AGCGGGCGGTGGGCGGCATGAAGAAAACACCC 53738 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 53798 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 53858 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 53918 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 53978 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 54038 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 54098 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 54158 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 54218 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 54278 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 54338 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 54398 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 54458 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 54518 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 54578 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 54638 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 54698 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 54758 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 54818 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 54878 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 64958-63430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQF010000011.1 Pseudomonas aeruginosa strain PAL1.19 NODE_11_length_246365_cov_16.0707, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 64957 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 64897 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 64837 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 64777 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 64717 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 64657 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 64597 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 64537 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 64477 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 64417 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 64357 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 64297 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 64237 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 64177 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 64117 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 64057 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 63997 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGTC 63937 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 63877 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 63817 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 63757 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 63697 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 63637 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 63577 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 63517 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 63457 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //