Array 1 1-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKQ01000033.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain FCUN156CA SRR2088763.ctg000034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 62 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 123 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CGCAACTATCCATGCAAATATTTCCATTGCTAGTGTTCCCCGCGCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 430171-431419 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKQ01000001.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain FCUN156CA SRR2088763.ctg000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 430171 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 430232 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 430293 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 430354 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 430415 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 430476 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 430537 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 430598 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 430659 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 430720 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 430781 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 430842 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 430903 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 430964 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 431025 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 431087 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 431148 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 431209 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 431270 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 431331 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 431392 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446698-448131 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKQ01000001.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain FCUN156CA SRR2088763.ctg000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446698 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 446759 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 446820 29 100.0 31 ............................. CCGGTCGGCGGTATTACTCAATATTTATACG G [446848] 446881 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 446942 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 447003 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 447064 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 447125 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 447186 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 447247 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 447308 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 447370 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 447431 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 447492 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 447553 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 447614 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 447675 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 447736 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 447797 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 447858 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 447919 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 447980 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 448041 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 448102 29 96.6 0 ............T................ | A [448129] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //