Array 1 40559-39431 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTT01000006.1 Escherichia coli strain MOD1-EC5061 MOD1-EC5061_6_length_162103_cov_24.2021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40558 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 40497 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 40436 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 40375 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 40313 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 40252 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 40191 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 40130 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 40069 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 40008 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 39947 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 39886 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 39825 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 39764 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 39703 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 39642 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 39581 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 39520 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 39459 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57309-56060 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLTT01000006.1 Escherichia coli strain MOD1-EC5061 MOD1-EC5061_6_length_162103_cov_24.2021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57308 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 57247 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 57186 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 57125 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 57064 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 57003 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 56942 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 56881 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 56820 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 56759 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 56698 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56637 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56576 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56515 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56454 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56393 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56332 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56271 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56210 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56149 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56088 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //