Array 1 158115-158572 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSSH01000009.1 Pseudomonas aeruginosa strain MSB2949 IPC907_9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 158115 29 100.0 32 ............................. CGACAGGTACGACTGGCGGTTGATCTCGATAG 158176 29 100.0 33 ............................. TGAACCCATCCACCACCGCCGAACCGTCCTGCA 158238 29 100.0 32 ............................. GGGTTCAACGACTGCGGAAACCGTCCGGCACC 158299 29 96.6 32 ..............T.............. CAGCCAGCTTCGGCTCTCTGCATTGTTGAGCT 158360 29 100.0 32 ............................. CCGGCCAGCCAGGCCGAGGGCGCGCTGTTGTT 158421 29 100.0 32 ............................. AAGGCTTCGGCAGCCTCCTTTGATATCCGCGG 158482 29 100.0 33 ............................. GCGGCCGAGGACCTCGACAAGCTGGTCGACTCC 158544 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.2 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CCAGCTCGACAGCGCGCGGAACTTCATCGCCGCCTATGCCTTGGAAGGCGAGTGGCTGCCGAGAGAGCGGGTCCATGGCTTCGGGGCGCTGATTGGCCGACCCTTGGGGCGTCTCGAGCGGTGGATGGTCTCCATCAACTACAAGGGGGAGGAGCAGTACAGCCCGATCCCCAACGATGCCTGTGTCCTCAGCCATCGCGACCTGATCAAGGCGATGGTCGCGACTCCCGGCGACCTTCCTGTCTCCACCGACGAGATGTTCGAGCTCGCCCAGGCGGCGCTGATGAACCTCAAGAGCCGCGCCACAGTGCAACAGCACCAGTTGCGGCAACTGCGCCAAAGGGTCAGGCAGTGAATGCCCCATCGGCATCCTCTGAGCACCTCAAGATGGAGCACGCTGGTATAAATGGGGGCCTTCCGGGGTAGCGCGAACGCCCGTTTTTATCGGTGGAGTTTTTCCTGCTATTTTTCTTATTTCAAAACAATGATATACGGAAAGT # Right flank : TGCGCTGCAGGTGATCCGCCTGACGCTGCGCAAGTGCCCCTACTGATGCGGGGGTTACCTCATGAGCGCAACCCTGGCTGGCTTGGGGCAGTAGGGGATGGCCGTAAACGGCATGGAGAGGGCGCCTTCTGGCGCCCTTTCTGTTTCTGCCAGATGAGCCCTGGGTTTTGATGTTGGCCAGGTGATGGTAGATTGCGGGCTTTTAGGAGGCTGGATATGGAAAGCGGCTCTTCTTTATTGCTTGGTTTTGTCCTTCTGATTGGAGGTGTTGTCCTCTACTTTTTACCTGCAATAATCGCTGAAAATAGAAAGCATCATAATAAAGGTGCGATAACTGTATTAAATGTGCTTCTCGGATGGACCTTAGTGGGATGGGTTGCCGCTTTGGTTTGGGCTGCGTCTGCCACAAGAGTGAGTGAGAGAAACAATTCTGTGGGTCGAAATAATCTAAATCTGCAAGCTCAAGCAAGTGATGTTCGACCATGTCCGTATTGCGCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65865-67032 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSSH01000017.1 Pseudomonas aeruginosa strain MSB2949 IPC907_17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65865 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 65925 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 65985 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 66045 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 66105 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 66165 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 66225 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 66285 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 66345 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 66405 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 66465 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 66525 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 66585 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 66645 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 66705 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 66765 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 66825 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 66885 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 66945 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 67005 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 77805-75557 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSSH01000017.1 Pseudomonas aeruginosa strain MSB2949 IPC907_17.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77804 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 77744 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 77684 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 77624 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 77564 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 77504 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 77444 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 77384 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 77324 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 77264 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 77204 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 77144 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 77084 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 77024 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 76964 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 76904 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 76844 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 76784 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 76724 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 76664 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 76604 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 76544 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 76484 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 76424 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 76364 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 76304 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 76244 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 76184 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 76124 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 76064 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 76004 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 75944 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 75884 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 75824 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 75764 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 75704 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 75644 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 75584 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 38 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //