Array 1 106157-105395 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMR01000004.1 Escherichia coli strain MOD1-EC292 MOD1-EC292_4_length_214575_cov_21.2712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106156 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 106095 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 106034 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 105973 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 105912 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 105851 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 105790 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 105729 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 105668 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 105606 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 105545 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 105484 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 105423 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACTGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123273-121658 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMR01000004.1 Escherichia coli strain MOD1-EC292 MOD1-EC292_4_length_214575_cov_21.2712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123272 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 123211 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 123150 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 123089 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 123028 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 122967 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 122906 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 122845 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 122784 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 122723 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 122662 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 122601 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 122540 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 122479 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 122418 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 122357 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 122296 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 122235 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 122174 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 122113 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 122052 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 121991 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 121930 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 121869 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 121808 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 121747 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 121686 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //