Array 1 426781-429019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENRJ010000002.1 Clostridium perfringens strain CHD10486P CHD10486P_seq2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 426781 29 100.0 36 ............................. TTTCAATTGTATCTTTGTCAATCTCTAACTCTTTTT 426846 29 100.0 37 ............................. AAGGAAAATAATGCAGCTAGAACGCTTTCTGAATCTC 426912 29 100.0 36 ............................. TGTACTAAAACTGGATAATCTCCAATATCTAAATTA 426977 29 100.0 36 ............................. ATTATTGTAAAGTAATACTAAGAAATACTAAGTATA 427042 29 100.0 37 ............................. TTATTTATAATCTTAAAAATAAAGAGGGAAGCTATGG 427108 29 100.0 36 ............................. AGTTGATATTTGGAGTAAAGATGGAATTGAAGCTAG 427173 29 100.0 36 ............................. AAGAAGAACTTTACAATGCATTAAGAGAAGAATGTA 427238 29 100.0 36 ............................. ATGTTAGCTTTGAAAATGCTATAATTGGTACAAGTA 427303 29 100.0 36 ............................. TAAATATTTAATAATTGTTTAAATATACTTTCAAAA 427368 29 100.0 36 ............................. TATAAATTTGTTAAATATAATCCTTATACGATAGAA 427433 29 100.0 36 ............................. TCCCTTCTTCTTTCCACATTTTATATCCTGTAATGG 427498 29 100.0 36 ............................. TGTACTAAAACTGGATAATCTCCAATATCTAAATTA 427563 29 100.0 36 ............................. TTGGTATTACTAGCTTTGAAGCACTTACAAGTAAAA 427628 29 100.0 32 ............................. CTCCTAAATCACAATCTTTAAAAGACAATTCC 427689 29 100.0 36 ............................. CTTATAGCTGCATTGATAGGTGCTTTAATAACTCCT 427754 29 100.0 36 ............................. TGTTAAAGTAGGATATTTTAGAGAGTTTGGAACTAT 427819 29 100.0 36 ............................. AGTAATGATAATAGATTAGATGATAACTTAAACTGT 427884 29 100.0 36 ............................. AAAGAGTAAAGGCAGATACTTTTGTTTCTCCTTTGC 427949 29 100.0 37 ............................. ATTACCATATTTTTCTCTTAATCTTAAAAGTTCTTCG 428015 29 100.0 36 ............................. CTTATAGGTGATGAACCTGATGAACTTGTAGCATTA 428080 29 100.0 36 ............................. TTTTAATAGTATAGGAGATGAATTAGAATGAGAAAG 428145 29 100.0 36 ............................. TTGTCTGAACGAATATCTATGTTATAAACTTTATTA 428210 29 100.0 35 ............................. ACGAAACCAAAAGAACAATAATACTTTTCCATTTT 428274 29 100.0 36 ............................. TGTTAAAATCATCTTCATTCATGATTTGGAAAGCCT 428339 29 100.0 36 ............................. AACATTGGTGTACATTTAACACTTAAAGATTTTAAC 428404 29 100.0 36 ............................. AATGTTTGTGTCCAATCTCTACTAAATGCTCCTTTG 428469 29 100.0 36 ............................. ACTAATTTCATTGAAATACCTCCTAATAACTAACGT 428534 29 100.0 36 ............................. TGTAATCTCTACATGTACTATGACACCCAACAATTC 428599 29 100.0 37 ............................. GGAGTTTTACTTTTCTTTATATCTTTTCTTTTCCATG 428665 29 100.0 36 ............................. TTGGTATTACTAGCTTTGAAGCACTTACAAGTAAAA 428730 29 100.0 36 ............................. AAAAGTTATCAACAAGAATTAAGGGATATATCTCAA 428795 29 100.0 36 ............................. TAGTTTTGGTAAAGTTAATAAGATATTAAAGAAACA 428860 29 100.0 36 ............................. ATTTTTTGCTCTAACCCTTGCCTTCCCATTTAAGCG 428925 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 428991 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ===================================== ================== 35 29 99.2 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAGGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAAATCTATTTTCTTATAATACTAGCTATAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTAGG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGTTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTTAAAAGTAAAAATGGACATGCTATCTGTCCATTTTTACTTAACTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACAGCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //