Array 1 250503-248886 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWM02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0120 NODE_3_length_413951_cov_37.248110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 250502 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 250441 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 250379 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 250318 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 250257 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 250196 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 250135 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 250074 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 250013 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 249952 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 249891 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 249830 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 249769 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 249708 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 249647 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 249586 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 249525 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 249464 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 249403 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 249342 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 249281 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 249220 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 249159 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 249098 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 249037 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 248976 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 248915 29 93.1 0 A...........T................ | A [248888] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 267842-267143 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWM02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0120 NODE_3_length_413951_cov_37.248110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 267841 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 267780 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 267719 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 267658 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 267597 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 267536 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 267475 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 267414 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 267353 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 267292 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 267231 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 267170 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //