Array 1 88477-93395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBN010000010.1 Streptococcus uberis strain GCPRG110 Contig_10_302.743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 88477 36 100.0 30 .................................... TAAGGTCAAACTCTCAATAAATAACATAGC 88543 36 100.0 30 .................................... TGTATTATCAAGTTTTGATGAATGGTTCTG 88609 36 100.0 29 .................................... ATATCAGATGTCCGATTTGATAGGAACAT 88674 36 100.0 30 .................................... GTAACAAACGACTTAAAAAATCTATCAATA 88740 36 100.0 30 .................................... GTAAAAACGAAGAAAAATACATTTTTATTT 88806 36 100.0 30 .................................... TGGTGGCGAACCAATCAAAAAATACAATTC 88872 36 100.0 30 .................................... GCTAATTTATTAGTAACATTTATAAAATCT 88938 36 100.0 30 .................................... TTATTTTGGTGTTTCTGTTCCATACTTGCT 89004 36 100.0 30 .................................... GCGTTCTTTTTAAGAAGCTTAATTGCTTCT 89070 36 100.0 30 .................................... TAAAAGCTTATAAAAAAGGTAGCGAGTATA 89136 36 100.0 30 .................................... TGATGATCGAGATAACACGCCGTTGATATT 89202 36 100.0 31 .................................... AGAATAGTTAATGCTATTGAAAAGGTAATAA 89269 36 100.0 30 .................................... TTGTTTTCCAGCAACTGAAATATCTTGGCA 89335 36 100.0 30 .................................... TGATGTTGACGGACTAGCACCAACATTAGG 89401 36 100.0 30 .................................... TGCTGAAAATGAGTTGCTTTATCCACAACG 89467 36 100.0 30 .................................... TTATTATGACAAATGCTGATTTTCATGCAA 89533 36 100.0 30 .................................... ATATTAGTAGCTAATAGCTCCATGTGTTGA 89599 36 100.0 30 .................................... CTTCATCATAGAAATCAGAGTTTTCCTTAA 89665 36 100.0 30 .................................... TCTGAGGATGCACGAAATGCAACAGACCAA 89731 36 100.0 30 .................................... TGCTCTTGTTATTTTTAAGCTGATAGTTTG 89797 36 100.0 30 .................................... TTTACAAGTCCAATGTAAGCTTCATTCTCA 89863 36 100.0 30 .................................... TAAATAAAAAAGAAGTATATATAAGAAAAA 89929 36 100.0 30 .................................... ACCAGTGGCTCGTTACTTGGCCAATCAATT 89995 36 100.0 30 .................................... TTTGCAACAGTTGAAGATGTGTCGTTATTA 90061 36 100.0 30 .................................... GCAAAAAATTACCGAACTGCAGGGCAAAGC 90127 36 100.0 30 .................................... GATTGAAGCTCGCGTCATTGCTTGGTTTGC 90193 36 100.0 30 .................................... CTATTGTGGACTTCTTCTTGATATGGGTCT 90259 36 100.0 30 .................................... ATCGCATCTCTTGTCGATACTAGCTATGCG 90325 36 100.0 30 .................................... TTGTTCACTATCATTTAACCCTGCGGTTGT 90391 36 100.0 30 .................................... TGATCATTCTGTTGACGACTTTCCAACACT 90457 36 100.0 30 .................................... AAAAATAGGAAAAGCAGTCGCAGATGCATG 90523 36 100.0 30 .................................... ATTAAAGACCGCATGTAATTTGTCAGCGCT 90589 36 100.0 30 .................................... AGTTTATTTATGAACATGACTACTCTGTAG 90655 36 100.0 30 .................................... CGTTTATTCACATTTCACAACCCCCTTTTG 90721 36 100.0 30 .................................... TAAAACACCTTTAACCGTCCACGACGACGT 90787 36 100.0 30 .................................... ATGATGTTTATTTGTTGCAGTTGCAACTTG 90853 36 100.0 30 .................................... TACGAACAATTTACATTTAGTAAATTCAAT 90919 36 100.0 30 .................................... GTTTTATTCATTCCCTCAAAAATATGTTTT 90985 36 100.0 30 .................................... GTACGTTTATAAAAGAAAGGAAAAAGAATA 91051 36 100.0 30 .................................... TTTGCTGAACTAATTATGTATTTTGCTAAA 91117 36 100.0 30 .................................... ATTGCCTTCAAACTAACGACTCAATGGAAA 91183 36 100.0 30 .................................... GGCTGGTTCTTCTAGAAAGGAAAAAGCGTA 91249 36 100.0 30 .................................... TTAAATTGTCATAGTATTCTAGTATTATCA 91315 36 100.0 30 .................................... GATGCTTTTTATCTTCGGTAGTGGCGGAAC 91381 36 100.0 30 .................................... TGGCTAGAAAGTCAAGGTTATACAAACTAT 91447 36 100.0 30 .................................... CTGTATTTGTATCTTGATACATTCCAATGT 91513 36 100.0 30 .................................... TCAAATTTTGCAGGTGTTACTATTAAGCCA 91579 36 100.0 30 .................................... TATGATGCACGGCAAGCTCACATAAGAGGA 91645 36 100.0 30 .................................... ATCAATATAAATGGAAACCTAACAGCACAA 91711 36 100.0 30 .................................... GGCTATACTGTATAAGAAACAAGCATTAAA 91777 36 100.0 30 .................................... AACTGCAACAAAGCTCACATCTAGTTCAGC 91843 36 100.0 30 .................................... AAAAGCTCTATGAGGGTCATCATAATATTT 91909 36 100.0 30 .................................... TAGTCCATCTGCAAGAAAGAGATATAAGAA 91975 36 100.0 30 .................................... CGCTCCTACTTCTACACGAGCGAACGCTTC 92041 36 100.0 30 .................................... TGGAAAATTAGTAGTCAGTAAAGCACATTT 92107 36 100.0 30 .................................... TAACGATGGCCTAAATGGTTCCAATGGCCG 92173 36 100.0 30 .................................... CCTTGACGCAAGCTCAAATGCTAGCGCTTG 92239 36 100.0 30 .................................... ATAATGCGATTCTACAACATCACTCTGACA 92305 36 100.0 30 .................................... GAAATGCTTGATATAGAAATTGTACAGTCT 92371 36 100.0 30 .................................... GTTATTGTTGATCCGTATGCGCCAACAGTT 92437 36 100.0 30 .................................... AAATTGTACTTCCAATTCTCTTCTTGGTTT 92503 36 100.0 30 .................................... TTAAACGGAACAATCGGAACTGTCGATGTA 92569 36 100.0 30 .................................... TTGATCAATACTTTAATGGCAAATTCATCA 92635 36 100.0 30 .................................... TTGTTCAACTGTAATATCATGCGTGTGTGA 92701 36 100.0 30 .................................... GGATACTTTTATCCGTCAAGAGTTGCCTAA 92767 36 100.0 30 .................................... GGGCCTTTTAGGTGGATTGTCAACTGGTTT 92833 36 100.0 30 .................................... CCATGTCAAGCCTTAAGAAGTATGAAGCAA 92899 36 100.0 30 .................................... GCAAGAGACATCTTAGCCGAAGCGCTTCTC 92965 36 100.0 30 .................................... TAATTCCTCCTTTCTTAAAGTAATGACATA 93031 36 100.0 30 .................................... TTATAAATAATGATTTTTTCTTGCACAATG 93097 36 100.0 30 .................................... GATTGTGCAAGTCAATCCATCTATTAGTCA 93163 36 100.0 29 .................................... TAATTCCTCCTTTCTTAAAGTAATGACAT 93228 36 100.0 30 .................................... TTTACTCGTTTAATGTGTAGACTTCCGAGA 93294 36 100.0 30 .................................... AAGCGGTAACATTATTCGACCGTCAACATA 93360 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 75 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAAAGCCAGAAGTTAAATCTATGGTTGATAAACTTGCTGCAACAATTACAGAATTAATTTCTTTTGAATGTTTGGAAAATGAACTTGATTTAGAATATGATGAAATAACGGTGCTCGAATTAATAAAAGTATTGGGTGTCAAAGTTGAAACACAAAGTGATACCATTTTTGAAAAATGTCTTGAAATTTTACAGGTCTATAAATACTTAAACAAGAAAAAATTACTTGTTTTTATCAATACGGGTTCCTATTTGAGCGAAGAAGAAGTGGAACAATTGTTTGAGTACATTTCTTTGTCGAATCAATCTGTTTTATTTTTAGAACCACGGAAATTATATGATTTTCCGCAATATATTTTAGATAAAGATTTCTATCTTATGCCGCCAAAAGTGGTATAATAGTAGTAGAATATATCCCAATTAATGGAATCTTTCAAAATTGAAATCCTGCTAAGATGAGTAGCGCGATTACGAAACTTTTTGGAAAAATTCTTCCACGAG # Right flank : CTATTTTTCCATAACTTTCCTCGTTTTATATGAGCCAACATTACATAAAACAGACACTTTAGAAAGTGCCTGTTTTTGCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTATTTAAAATGTATAATTATTAATAAAATAGTCTTAAAAATGTATATCGAGAAATACCTTTTCAGGTTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //