Array 1 7178-6504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLQ010000064.1 Bacteroides caecigallinarum strain An428a An428a_contig-110_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7177 36 100.0 28 .................................... AGCTTACCAATTATAACCGCGTAATTAT 7113 36 100.0 28 .................................... TAGAAGATGCGCAAACAGAGTGTTTCTA 7049 36 100.0 26 .................................... GGATACAGTACCGTTTGCAGCCAGTA 6987 36 100.0 30 .................................... GTTGCACTGCTTGAGGATGTTCAGGGCATC 6921 36 100.0 27 .................................... GTAAACAACAATGTCATAGAACTCCTC 6858 36 100.0 28 .................................... TTAACCTTCAACCTTTTTCTTGTACGGC 6794 36 97.2 26 ..............A..................... GGCAGAAGACGGCCTTGGAATTGTAA 6732 36 100.0 26 .................................... GTAATGATGCGTTCTTGATTTCTCAG 6670 36 100.0 29 .................................... TAGTCCTATTATAAAGACTGTTTTCATTT 6605 36 100.0 30 .................................... GGAAAGACCACGCAATACGAGCATTACGGC 6539 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.7 28 GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Left flank : | # Right flank : AATTCGAAGTCTTTTACGATTGTATATAATAACTTAAAAGTATACCACCCTAATAATTAAAAAATATACTATAGACAGTCAGTTAAAACTAAGTAGTAGTATACTTTAAAATTATTATGCATATACTAATTTGAAAATATTTTTATTTTATAGACAGTAAAAGTTTTTTGTTTACTTTTGTAATTGAAAAACATATATCTGACCATGGTTGAGCATTTTTATAACAACATTATATCCACCAACCGAATAGGAAAAATATTTGACAAAACAGTAGCCACATACAAATATTTCTGGTTCCTGTCAATCATGCAAATACATGCAAAGACAGGAAACTTAAATATAAATGTATGGAACATAGTTACGCAGATGGTAGCCAATGCCTGGTATCCTATACATTATTTCAGGTTATCGTTTGGGAAAACAGATTCATTGTACGATATAGTTACACAGTTGCATAAAGAAATAAATATTCCTATTGATGCAGGAACGGAAGCTGTTAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 73045-73399 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLQ010000015.1 Bacteroides caecigallinarum strain An428a An428a_contig-110_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73045 36 100.0 27 .................................... CTCACACGCATTGGCGACGTGAGAGAG 73108 36 100.0 28 .................................... ATATAAGGCATTGCTGTGGATGCTGTGG 73172 36 100.0 27 .................................... CCATTCCTTGAAAGACCACAGGTTAAA 73235 36 100.0 27 .................................... TTTTTTGCTTCCTGACCTGGTATATAC 73298 36 100.0 30 .................................... AAAAAACTGTCTTCTCTTGTACTTATCAAA 73364 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 28 GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Left flank : ATAGATTTTTTATGCAGAGAAAATTAGAAACAGAGTTCCCTTTATTTAAATATTAATGGTAATAGTTAGTTATGACATATCGGATGACCTTATCCGCTCTCGATTTCAGAGAATGCTGGTTAAAAATGGTGCAATTCGTTTGCAATATTCAGTTTATGAGGTAGTTAATACGAAAAGAGTGATTGAGAATATAAAAATAAAGATTGTCGCGTATTCCAAACATTTTAGTGCAGATGATAGTGTGGTAATTTTTGAAGTTGGTAAGGATTCTTTGATAAAATATGGTAATGCTATCCATCGTGATACAGATATAGTGTTTTTCTAGTGATTATCGTCTATACACAACTATAAGTCTTCTAAAAGAGTAATTGAAGTTATAATGTGGTGATTATCAATGTGCTAATTGAAGTGTCTCTGGTTAGGTGGGGTGATAATCTAAAATAAATATCTGTCTATTTATTTGATTATTAATAGAAAATACTGATATTTGCATTATAAGT # Right flank : AAGGGAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTATATGACTAAGTAATTTCTACTATGTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 414-159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLQ010000162.1 Bacteroides caecigallinarum strain An428a An428a_contig-110_161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 413 24 100.0 28 ........................ TTTTTGCTAAAAAATGCCCAAAGTCGCT 361 24 95.8 38 C....................... GTGGTTTTTGATTACGATAAAATGTCCGTTTTAGTATA 299 24 83.3 41 C.G...T.....T........... GAGATAAGAATGTAATGATACAATAATCAGTTGTTTACATT 234 24 91.7 28 CG...................... CCTTCTCACAGAAACGACAATGCCTGCA 182 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 5 24 94.2 34 TAAAAAACGGAGCATATCCGTTCA # Left flank : TTGCTAAAATGGGCTTGAAAAGGGC # Right flank : ACTTGCTACTCTTTTCCCGTATCTTGTATGCAGAAAACAATCTTCATACGATACGACTATGGCAGGAAAAAGTAAGAATATGAGCCAGATCAAACAACTTCTTCTATTAAAGAAGAATGGAGTCTCCAACCGCAAGGCTGCCGATATAATCGGCATGAA # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAAAACGGAGCATATCCGTTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //