Array 1 2940-2312 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SIVX01000036.1 Vibrio cholerae O139 strain NALMLE48 NODE_36_length_8600_cov_40.5066, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
      2939	    28	 100.0	    32	............................	AACGGGCCAGCCCCGCCCTTGGTGCTCTCGGG	
      2879	    28	 100.0	    32	............................	ATCCTCTAAATTTTCAACCGTTCCTTTATTAG	
      2819	    28	 100.0	    32	............................	TGCACGATACTATCACCAACGCCGATGATTGT	
      2759	    28	 100.0	    32	............................	TTTTAGGGCGATAGGGATAAAATTCTCGTATT	
      2699	    28	 100.0	    32	............................	TTTCAGGCCGATAGTGAAGTCGTACTCACCCT	
      2639	    28	 100.0	    32	............................	TAGCACGCTAGATGATGAGTTGTAATAGCTAA	
      2579	    28	 100.0	    32	............................	CGTAGATTTATTAAAAATGGTGATCTTGCTGG	
      2519	    28	 100.0	    32	............................	GTTAACTAAATACATAGAAGAGTGAGGGGGGA	
      2459	    28	 100.0	    32	............................	AATCCTCAGTGCGTAAAATTTCATCAATCTGC	
      2399	    28	 100.0	    32	............................	GTCAGAGTTTCGACATCACGATTGAGTATTTC	
      2339	    28	  96.4	     0	........................A...	|                               	
==========	======	======	======	============================	================================	==================
        11	    28	  99.7	    32	GTTCACTGCCGCACAGGCAGCTTAGAAA	                                	       

# Left flank :   TAACTAGAGTCTTATATACTCAAGCCCATGTCGGAACGGACTATTTAGTAAGGTTTTTGACCTTTGATATTGCCTTACATGAATTTTTTAAGTCTATCAAAATCAATAGGTTCTCTCCAATTTTCAATGGATATGAAAGCGGAGTGTTCACGGATCTCGGTTTTAGTAAAAAAATATTCTCTGAAATTGATGATCAGGAATTTGAAGAGCTATCACGTATTATTTTAAACACATAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTGTTACTATGCGTTGGTTTTTGTTGTTACGGTGTTATGCGGTAATTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCTAGCAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA
# Right flank :  TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATATTTCTTTTCAGTTCAACCATCAAAAGGATTCATCATGAACGTGGATAAGGCGAAAAAACGCATATTGAAACGAGTACAAAGAGGTTTCAGAGGTTATCCGCAAATATCATTAGAGTATTTCGGTGAAACGACCGATTTGGCGACCGAAGTAGTCATCACTTTTGTTCCTGAAGAAAATGCCGAACCACAAATTCAGAGATTTACGAGTGACAAAGATGTCCGTGAAGATGAAGCGATTCAATCGGTATTGCTAAAAATCATTGAACGAGCAGAAGCTGCGACTGTTTTAGAGAGCCGAGAAATATCGGTTATTTAATGATTTTTGGCAATGCTCAACGTTCTA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGCACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//