Array 1 99714-101071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAI010000002.1 Streptococcus lutetiensis strain PA11362C1(4) KS17_NODE_2_length_281484_cov_376.696_ID_307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 99714 36 100.0 30 .................................... GGCTCATTACTAAGGTATTCTCTAAAGCCT 99780 36 100.0 30 .................................... CTAAAATCGCAAATATCACTGGTTTAACAT 99846 36 100.0 31 .................................... TTGCCGTTTTCGAAAGAAGATAATTGACTGG 99913 36 100.0 30 .................................... ACTTCGCTGGCAAGACTAAGGAAGAAACCG 99979 36 100.0 30 .................................... AGGTTTAAACTAATGGTTCCAAGCTTGGCT 100045 36 100.0 30 .................................... TTGATAAAGAATTAAAACGTGACGAATCTA 100111 36 100.0 30 .................................... CTTTCAGTTATCGAACAATCATCAACAGAG 100177 36 100.0 29 .................................... TTTTTTTTCCTTTCTATATATTAAGCATT 100242 36 100.0 30 .................................... CTTTTAGCAGATGATGAATCATACACCTAT 100308 36 100.0 30 .................................... CAAAAGAAAAACAAAGAATGCGTGAATTAC 100374 36 100.0 30 .................................... CTGAAAACCAACAGCAAATGGCTAGATTGA 100440 36 100.0 30 .................................... TTGTCGCCGGAATGAATAAACAGCAACGCG 100506 36 100.0 30 .................................... AGATATATTGAAAGTCAAATGAATCAATTA 100572 36 100.0 30 .................................... ATTTGGCAGCAATGCTGGAAAGTGTGTCAC 100638 36 100.0 30 .................................... ATTTTCTATTTTTTATGCGTGTTTCAAGTA 100704 36 100.0 29 .................................... TCCGCAAATTGGTGCGACGCGCCACAATA 100769 36 100.0 30 .................................... TATACCACGACTTGTTTGTTTTGAAATCAC 100835 36 100.0 29 .................................... GATTACTATACCAGTAATTGGTGCGCAAG 100900 36 100.0 29 .................................... AAAGCGAAGCCAAGAACTACTGGATTGGC 100965 36 100.0 29 .................................... CTTAATCTAATAAACTATAAAATTATCTA 101030 36 88.9 0 ....................T...AAA......... | A,C,TAA,T [101052,101059,101062,101066] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.5 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGAAACTGAGGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGTTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACTGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTAGTAGAATGGTTAGTCAGATTAGCTGACTGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGATTTGGAGAAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAACTAACATTATGGAGCTGTTCGAGACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : CTGTAGTAAAAATTACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 101675-101975 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAI010000002.1 Streptococcus lutetiensis strain PA11362C1(4) KS17_NODE_2_length_281484_cov_376.696_ID_307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 101675 36 100.0 30 .................................... TGCCTTACCTACGTTATGGACATACTAACT 101741 36 100.0 31 .................................... CTTTGGTCTATGGCGAATGAAAAGGCTTCGC 101808 36 100.0 30 .................................... TTCTTTATGTTATAATTAAGCATAGCCTTC 101874 36 97.2 30 ..............C..................... AAATATACGCTATAATATACTTGTAAGATA 101940 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 99.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGGTTTGGGGAATAAAATAATTAAGTATGGAATTATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAGG # Right flank : CTGTGGCTACTAAATATGAATACACCAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTAATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAGCGCTTTCTGCAAAACTTGTAAAATGATTTGTGGTAGCTGGTTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGTATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTAC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //