Array 1 574664-576478 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483328.1 Streptococcus equi subsp. zooepidemicus strain NCTC12090 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 574664 26 100.0 42 .......................... ATTTCAGCCTTCTAACATCAAGGAGAAACCAATGATGTCTCG 574732 26 100.0 39 .......................... TCAATTAATTGTTGTAACTTTGACAATCTCTCAGTCTCG 574797 26 100.0 43 .......................... CATGCCAATAGCTTGAGCTTATGCTGTGGGTAATCATGTCTCG 574866 26 100.0 40 .......................... CTGTTGAATTGCGATTTAAAGCAGAATTTATTGAGTCTCG 574932 26 100.0 39 .......................... AAATAGACTTGTTTCAAAACTTTTAATCATCTTGTCTCG 574997 26 100.0 41 .......................... GAAATTTTTGGCACAAGATCCTCTCTATAAACATCGTCTCG 575064 26 100.0 41 .......................... CAAGTTAGTAGTCGCTTGGTCGACATTCTCATTTGGTCTCG 575131 26 100.0 40 .......................... GCGAAGATAATATGCCAATTGAAGTTGTTAATCGGTCTCG 575197 26 100.0 41 .......................... GTCTATATTACTTAACTTATCTATATAACCACCTAGTCTCG 575264 26 100.0 39 .......................... AGCTACATAACGGTTAACAGCAGCCATAGCACAGTCTCG 575329 26 100.0 40 .......................... ACCAAAAACCTCTGATAACTCCTCTGTGCTTACCGTCTCG 575395 26 100.0 40 .......................... AGCTGAAAAAAATAAAGGTTTTGATTATCATAAGGTCTCG 575461 26 100.0 40 .......................... AAAAAGGACTAGATATTACCTACAACTTGTCCTTGTCTCG 575527 26 100.0 40 .......................... AAGAGAAGATGTCCGACTCACCGAGTCAGAAATCGTCTCG 575593 26 100.0 40 .......................... TGCGTTGTCAAAAGTGTTAAGAGGAGAGGTAACAGTCTCG 575659 26 100.0 40 .......................... ACTTTCATTAAGATAGGTCGTATCTGGTAAGTAAGTCTCG 575725 26 100.0 41 .......................... CCGTCAAAGATGTGCATCAGACCTGTACCGTCACCGTCTCG 575792 26 100.0 40 .......................... GGCTTTAAAGTGCCTATTGTCGTTGACCAAAACGGTCTCG 575858 26 100.0 40 .......................... TTATTATTGGCTTTGTCTATCAATAAAAAAGCTAGTCTCG 575924 26 76.9 40 ..TTTC.T.......C.......... AAAAAACGATGAGTAGCAAACTTGCAGAAGTTCAGTCTCG 575990 26 76.9 41 ..TTTC.T.......C.......... AAAGCCGAGAATGGAGCTAAGATGATTTCCAGTCGGTCTCG 576057 26 76.9 39 ..TTTC.T.......C.......... TTGGTGAGGTTGAGTTTAAAGGTAAGATTGACTGTCTCG 576122 26 76.9 41 ..TTTC.T.......C.......... GCAATACGTTAGTGGCAAATCTGTTCCAGCTCAACGTCTCG 576189 26 76.9 39 ..TTTC.T.......C.......... TTGTAGAAGCACAACAAGGCACGTTGCAATTTAGTCTCG 576254 26 80.8 40 ..TTTC.T.................. AGAAATGAATGCTAAGGTAAACTCACTAAATAAGGTCTCG 576320 26 76.9 40 ..TTTC.T.......C.......... ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 576386 26 80.8 40 ..TTTC.T.................. ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 576452 26 80.8 0 ..TTTC.T.................. | T [576476] ========== ====== ====== ====== ========================== =========================================== ================== 28 26 93.0 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TGCGATACGTGCCTTTACGATGTTGCGACTCCGTCTCGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATCATATCGTATTCATCAAGCTGATTTAAGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTATTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATTATCTCAGCTAGACTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGTTGATAGGACTTTGCTGATGGCCTAGTCAGGCATATCGTATCAAATTCAAGTTTTTTCATGTCACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAG # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1475401-1475101 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483328.1 Streptococcus equi subsp. zooepidemicus strain NCTC12090 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1475400 36 100.0 30 .................................... TCAACAATAGCTAAATCAAAATGCTTATCA 1475334 36 100.0 30 .................................... AGCTCAACGATGAAATCGCTCAAGCTATCT 1475268 36 100.0 30 .................................... CGTGGCCCTCTTTTAAGCCCATCCACGCTA 1475202 36 100.0 30 .................................... CAAAGGAGCTGTTATTCTAGATCCTTTTAT 1475136 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGTTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGGAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAGTTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CCGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTACTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //