Array 1 344353-344619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEK010000002.1 Pseudoalteromonas sp. MMG005 assembly_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 344353 28 100.0 32 ............................ TTTCCCGCTTGCATTACACCGCCGCCCGTTTA 344413 28 100.0 32 ............................ GAAATAAAGTATCAGCGCCATTGTCTTTGCTC 344473 28 96.4 32 .................C.......... TGCATTAGCCCGATTAGAGGCTATATCATATC 344533 28 89.3 32 ...AC............C.......... TGAGTAGTCGAAAAGCGATAAGATTGTTTTTT 344593 27 85.7 0 ...AC............C....-..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTGTTCTGCCGCATAGGTAGCTGGAAAT # Left flank : AACTACTTTGAAATGATGGCCCACGACAAGCTGTTTGAAATGTCAGCTATAAAGCCAGTACCAGTCGATGCCCCTGAAGTACAGATTATCCGCGACCAAAGCTTAGGTAAATTGTTTATGGGTGAAAAGCGCCGCCGAATGGAACGCGCAAAACGCAGAGCCGAAGCACGTGGTGAGGAGTACATTCCACAGTACGTGCTGAACGATACAGAGATTAGCACATTTCATAAGATCCCCATCGCCAGCAAAAGCAATCAAAACGACTTTGTACTGCATCTAAGGTTAGAGCCAACAGACTCAATACAAAACACCTATAACAGCTATGGCTTTGCAACAAACAAAGAATACAAAGGCAGTGTACCGTTGTTAACCTTTTAAATCTCAATAGCTTTAGGAGTGTTGTATATCAGAGAGTTACGAGCCGTCGGTAAAACAAAGGTTATTCGTTAAAAGTTAGGATAATCGTATGGAACTTATGAAGTTTTAAGCTAATTTTAATA # Right flank : TTAGGCCTGGAAGTAAACAACTACATCGTATGACATAAAACTGCCGAAAAGGCAGAGGCCAATTCAAAAGCCCCAGAATTTACTGGGGCTTTTTGTTCTAGCAACATATATTTTACTTTTTAGGTTGACGGAGATTAGACTAAAAGGGTTAACTAGGGCAGGTATTAGTTACTATCAACAAGCCATGAATATTAGGGAAGATATGTCATCAATTAGCAACACAATAGAGTATTTCAAAGACGACTTCTCCAAAGGTTTGTTCCCACTAGATACAAACAAAATAGTGATCACGAATAATGCTAATGCGATAAGTGATTATGTCTATCAGCAAGTGCTTAACTCAAGTTCTACTAAAGAGCATTTTCTTCCTCAAGCAAGGTGTCATGCTGCGAAGCATGGTTTGCATCTAAGACGAACTTTTAAGCTTGACCCTGTTGCAGAATTTTACATTTACGATCTGGTATACAGGAATAAATCGTCATTTAGGAAAGATTTTTCTG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGCATAGGTAGCTGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 10210-11317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEK010000007.1 Pseudoalteromonas sp. MMG005 assembly_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10210 28 100.0 32 ............................ TTTATACAAAGGTATCCATTGGTATAATTCCG 10270 28 100.0 32 ............................ GATGGCCGCCGATGGGCTTGGGGATATTGTGG 10330 28 100.0 32 ............................ AGTACGAGTGCTATATATGTACGGGGGATCTA 10390 28 100.0 32 ............................ TACATCAGCCATGCAACTAATTCACCATATCG 10450 28 100.0 32 ............................ AATAAGGGTGTGTTTTAGCACGAGCCAATAAG 10510 28 100.0 32 ............................ CCTTAGAGGCCTTTAACTATGTGCGCCAGCAA 10570 28 100.0 32 ............................ AACGGGCGTGGCACATTAACCATGCCTGGTTC 10630 28 100.0 32 ............................ TTACGACGGTTTTTCATCGTCTGAAGACTTAC 10690 28 100.0 32 ............................ GTAAACCGCAGACGGCTGGATTTCACTTTGTC 10750 28 100.0 32 ............................ ATTTTGTCAATATACATCTCCACAATTAACTA 10810 28 100.0 32 ............................ ATTGTCGAGTGATCTTAAAGCGCTTTACCAGC 10870 28 100.0 32 ............................ ATTGGTGCTGGGTGAAGACTTTGAAGTTAACT 10930 28 96.4 32 ...........T................ AGTGGGGCCGACATATGACCGCATACACTTTA 10990 28 100.0 32 ............................ GATCGGCGCTTGCAACAAAGCAAGCGCTACAG 11050 28 100.0 32 ............................ TAACGAGAAACCAATAGCGGGTGAACATTGCC 11110 28 100.0 32 ............................ AGCATTGAGGATTGGTAAAGCAAAAGGTGTGT 11170 28 100.0 32 ............................ TGAATTTAACGACCCGTCAGGTGCATTAGTAA 11230 28 100.0 32 ............................ TGACAGGTCCGTCAACGTGATTATAATTTGGT 11290 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTATTGTCTTCCTGAACTTGATTCAGGATCTACAATATCGAATATGTTTCAACATGGGCCCTGAAACCAGTTCAGGGCGACGAAGGTGGGTGGTTCAGTATATTTACTATCGCACGGCAGCACAGGCAGCTTAGGTGATAAGGGGGCGAAACGCTTTCGTTTCATAGAAGATGCAGCACTTCGATGTGAGGTCATACACCCCGTCTTCCTGACGTAGGTCAGGATCCACAATATCGTATATGTTTCAATATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGGTTATGTTTGTGCACTGTAGCAAAGGTAGTTTGATGTGTTTGGGTAAGTTGCAGTTCGTTAGAGGGATAAATACCCTTTAAAAACCCTTTATTTTTCGCTCTTTAAAAAGTAACTATAAAACAGTAAGTTACAATTAGTCGTTTTTTATATGGTTAAAATGGTATTTTGGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATATTCTATT # Right flank : GATGAGGGGGCGAAACGCTTTCGCAGCACGAAGAAGTGAGGTCATGGATGACCGATGTGACCCAGCTCCATGGATGGATTGTTTACCTTAAGTGGCAACTTTATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGGTATTTACTATCGCACTGCCGCATAGGTGATAAGGGGCCGAAACGCTTTCGTTTCATAGAAGGTGCAGCACTTTGATGTAAGATCATACACACCCCGTCTTCCTGACGCAGGTCAGGATCCACAATATCGAATATGTTTCAACATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGGTATTTACTATCGCACTGCCGCATAGGCAATAAGGGGACGAAACGCTTTCGTTTCATAGGTGACGCAGCACTTCGATGTGAGGTGATACACATCCTGTCTTCCTGACGCAGGTCAGGATCTACAATATCGAATATGTTTCAACATGGGCCCTGAAACCAGTTCAGGGCGACGAAGTTGGGGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 22460-23508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEK010000007.1 Pseudoalteromonas sp. MMG005 assembly_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22460 28 100.0 32 ............................ TATCTGTTAAGTAATGACAAAATCCTACATTT 22520 28 100.0 32 ............................ TTTGCCATGACTCGCCACTTTTACGCGCGTGA 22580 28 100.0 32 ............................ CCTAAGATACAGCCAATAACAAAAGCTAAAGG 22640 28 100.0 32 ............................ TAATGTTGACGCTTCTGGGTTGATCGCACTCA 22700 28 100.0 32 ............................ ACGTATAACGAAGATGACTTAACCATACTTGC 22760 28 100.0 32 ............................ TCATTTGGATAGTTGCCTACCAGCACTTGAGT 22820 28 100.0 32 ............................ ATATCATATTCGATAGCAGCATCGATAAGTAT 22880 28 100.0 32 ............................ TTGATTCAGCTCTGTATTCATCACAACAGAGC 22940 28 100.0 32 ............................ ATGGCAAGGCAGCGGGCACACAGGCGTTTCGA 23000 28 100.0 32 ............................ AATGACTGAGGTGGATGCTACTTGTATTGGGC 23060 28 100.0 32 ............................ CAAACAAATTAAGCGCCGACTCAGCTGCAAGA 23120 28 100.0 32 ............................ CTTCTGAATTAGGAATGACTGTCGGTGAAATA 23180 28 100.0 32 ............................ TTCCGAAAGTTGAAAGTTCTCGGGGCATTGCA 23240 28 100.0 32 ............................ GTCTCAGAAACGGATTAGAAGGTCGTATGGAA 23300 28 100.0 33 ............................ TATTGAGAATAAACATTCATTGACCGTTGATAT 23361 28 100.0 32 ............................ ATCGCTACTCACATACTGCAACCCATCTTTAA 23421 28 100.0 32 ............................ CAAACCAATGAGCTGCCGCTTAGCAAAGTATC 23481 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGTATGCCTACTTTAAGCGTAAGAACTTTAAGTCACCGGCAAAACTAATGAAAGAAATAGATTCGCGAGCAGCAAAAATTGCCGCCAAGAATGGTTTTGATTTGGTAAAAGTTAAAGAACGTTTAATGGTATCTATAGCAAAGCTTGAAGAGCGTTCAACTTTACCTTATATCAACTTACGTAGTCTTTCATCTGATAAATTACTCAGTGCAGAAGATCGAAAAAAGTTTTTGTTGTTTATTGAATGCGAAATTGTCACACAACCACTTAATCAAATAGGTTTATTTACATGTCATGGCTTAAGCCGCCGTTCTGAAGAGGAGCAATCGGCAGTGCCTTGGTTTGAAGGGTAATAATACCCTTTAAAAACCCTTTATTTTTCGCCCTTTAAAAAGTAATTATAAAACAGTAAGTTACAGTTGAGCGTTTTTTATATGGTTAAAATGGTATTTTGGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATATTCTATT # Right flank : GATGAGTGACCGAAACGCTTTCGTTTTCATAGGTGGCGCAGCACTTCGATGTGAGGTCATGGCAGATTTTTTGTTCCAGACAAAACCTAAGTACCTGCATCCATGCAGGCAACGACCGATGTGACCCAGCTCCATGGATGGATTGTTTACACTTAAGTGTCAATTTCATGGACCCTGAAACAAGTTCAGGGCGACGAAGGTGGGTGAGTTTATCCGTTCACTGTCGCAGCGCTTCGATGTGAGGTCATGGAAGACCGATGTAGCCCAGCTCCATGGACGGATTATTCACGCTTAAGTGTCAATTTCATGGACCCTGAAACAAGTTCAGGGCGACGAAGGTGGGTGAGTTTATCCGTTCACAGCCGCACAGGTAGCTGAGGTGATGAGTAACCGAAGCACTTTCGTTTCATAGGTGGCGCAACACTTCGATGTGAGGTCATACACCCCCCGTCTTCCTGACGCAGGTCAGGATCCACAATATCGAATATGTTTTTCAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 26240-27647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEK010000007.1 Pseudoalteromonas sp. MMG005 assembly_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26240 28 100.0 32 ............................ CAGATCGCAAGATGTAAAAAACCATGAATCAA 26300 28 100.0 32 ............................ GCTCGAGTATAGTTGAATTCATCTATGCAAGG 26360 28 100.0 32 ............................ CACAAAGACAGCCCCCGTTTTTTCTGCTCTAT 26420 28 100.0 32 ............................ CGATGGATATAGGGCTACCAGAAAACGAGATA 26480 28 100.0 32 ............................ AGATACGTGTCCAGTTGATAAGCTGGACTATT 26540 28 100.0 32 ............................ TGTAATGAGTCATTAAACGCCCTACCCACAAT 26600 28 100.0 32 ............................ TTAGCTCGAACCATAGCGATAAAACACAGGGC 26660 28 100.0 32 ............................ GTTCTCCCTGAAATTCCATAAATCATATTAAG 26720 28 100.0 32 ............................ TTGGGTTGTCTGTTTGCAATATCAAATGACCC 26780 28 100.0 32 ............................ TTACGGCAAAGGTGCTCCGGTATACGTAAACA 26840 28 100.0 32 ............................ ATGCTCGCTCTAGCTGCATTTCTTTGCCTTTT 26900 28 100.0 32 ............................ AAATATGAAAGCCCGCATCGACTTTACCCCGC 26960 28 100.0 32 ............................ CATAGATGTGCTGCCAGTAGCGAGTCGTTAAT 27020 28 100.0 32 ............................ TCGATAGATACGCAGCAAGATCGCTTTGATTA 27080 28 100.0 32 ............................ GCACCAAGGGATGTACTGGATGACATAGGCGC 27140 28 100.0 32 ............................ TCTTGCAGTAATGCTTGAGCTTACGCTTGCAA 27200 28 100.0 32 ............................ AGTTGAATGTGATGTGCACATTACATGGCACA 27260 28 100.0 32 ............................ TCTATGTTTTCACCAAGATAAGCATCATCATA 27320 28 100.0 32 ............................ TTCGCGAGCTGCTAACCAAGTGTTTAGTTCAG 27380 28 100.0 32 ............................ AATTGTTACGCAGCAAAAACGAAAAGTCGTGA 27440 28 100.0 32 ............................ AGAGAGACTGCATACCTACCTCTGGCTCTAGC 27500 28 96.4 32 .........T.................. CATATCACTTCGCGGGCCGAGTGTTTGAACTG 27560 28 100.0 32 ............................ GCGCAGTACAACAAAGATTAGATAACTTATTT 27620 28 85.7 0 ...T.....................GTG | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCGTTTGCGTATCTCGATTGTAAATTATAGGTTAATTTATGTGTGTCGAGTTGTTTGTTTTTTGTTCTCTTAATAGATGTGTGTATTAGCGTTATTGTTAGAAGAAAACACATTTATTGTCAGACAATGTACAACGTTAACGGTTGTTTTCGCTGGTAGAGTAGGTGGGTACTCACATACCCCAAATGAATTGAACCTGATATCATTCGATGAAAGCGTATTTCTTTTAAAAGTAACCGTACCTATAAGGTGATATTTGAGTACCGATTTAGGCGAGGTTTTAGTTATAACTTAAGGTAATAGCGCCTTGAATCTTGAAATAAATTCATGAAGATGAATAGATATGAGCTGTGATTAGTTACTCTAAAACCCTTTATTTTTCGCTCTTTAAAAAGTAACTATAAAACAGTAAGTTACAATTGGTCGTATTTTATATGGTTAAAATGGTATTTTAGCGGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : GATGAGTGACCGAAACGCAGTTTCGCAGCACTTCGATGTGAGGTCATGGATGACCGATGTGACCCAGCTCCATGGATGGATTGTTTACGCTTAAGTGGCAACTTTATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGAGGAAGGACGACGAAGGTGGAGGAAGGGCGACGAAGGTGGGGGAGGGGCGATGAAGTTGGGTGGTTCGGTATATTTACTATCGCACAGCCGCACAGGTAGCTGAGGTGATGAGTAACCGAAACACTTTCGTTTCATAGGTGGCGCAGCACTTCGATGTGAGGTCATACACACCCCCGTCTTCCTGACGCAGGTCAGGATCCACAATATCGAATATGTTTTTCAACATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTAGGGAAGGTAGGGCAAGGGCGATAAAAAGGTGAGGGTCAGTATATTCAATGTTGCACAGGCGGCACAGGCAGCTTAGGCGATGAGTGACCGAAACGTAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //