Array 1 794-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJK01000024.1 Streptococcus agalactiae strain M94 NODE_24_length_793_cov_113.076149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================= ================== 793 31 86.1 30 -----............................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 732 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 666 36 100.0 30 .................................... GAAACTTCGATTAGTTTGCGTACTCGCTCA 600 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 534 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 468 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 402 36 100.0 30 .................................... GTACTGTATTATCTGAAATAGTATCGTTTT 336 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 270 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 204 36 77.8 71 ............................NNNNNNNN NNTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATTGTTTTTGTTGTAATATAAAGTCGAC 97 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 31 31 86.1 0 ...............................----- | ========== ====== ====== ====== ==================================== ======================================================================= ================== 12 36 95.8 34 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 215918-215246 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJK01000001.1 Streptococcus agalactiae strain M94 NODE_1_length_559628_cov_145.038327, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================= ================== 215917 36 100.0 31 .................................... CACCGCAATACCACTGTTATTCATAAAAGTA 215850 36 100.0 30 .................................... GCTGGATAGATTAACATAGTTTTTCCTTTC 215784 36 100.0 30 .................................... TCATACGCACAATGAGGCTTCAAAAGCTTC 215718 36 100.0 30 .................................... ACGTACCCAGCGATATACTACGCAGAATGG 215652 36 100.0 30 .................................... GATATGGTGGACAGGTTCAGCAGGTCATGT 215586 36 100.0 30 .................................... TATCGCAAATGAAACAGGCGCTTTTGCACT 215520 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 215454 36 86.1 71 ...............................NNNNN NNNNGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTAATAACTGTCCGTTTTGCCATTTCTTGC 215347 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 215281 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================= ================== 10 36 98.6 35 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 46190-45363 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJK01000006.1 Streptococcus agalactiae strain M94 NODE_6_length_109742_cov_162.109599, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 46189 32 100.0 36 ................................ TCTTTCATAAGCAATCCTGCTATTTGACCATTGAAG 46121 32 100.0 33 ................................ AATATATTTTGGCTGTGTTCTTGCGTAATAATT 46056 32 100.0 33 ................................ CTTTCTTTGTAGCTCCTTCTATTATACCATTTT 45991 32 100.0 33 ................................ AATTTCATCTGTTAGGCTCCTTTTTCGCTTTTG 45926 32 100.0 35 ................................ AATCATAAGCTATCTCAACGCAATCTTTAAGTCGT 45859 32 100.0 34 ................................ AATAAAGTCTGCAAATGTAAAACTTTTTAGAAGT 45793 32 100.0 34 ................................ TTACTGTATTAACTTCTGTACCGTCTGAAAATTG 45727 32 100.0 36 ................................ ATTCAATGAATTTAGGTTCGTGGGATATAGAAAATC 45659 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 45593 32 100.0 36 ................................ ATGTTACCTCCTTTTAAAAAGGTCTATCCTTGCCCC 45525 32 100.0 35 ................................ AAAAGATTATTGCCTTTTTTAATAACACGGCTAAA 45458 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 45393 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.3 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTGAGGAACAGTGCATTTTATGGCGCCCTACGCCCTGTCTTATTTACAATATCTATTTGATGCGACTATAACTCATGCTAGTGGGACTGCGACTTTTCCAAAAGGTCAAAGCGATAGTCAATCCAAACTACTCTTGCAATTATCAAATGGGGTCCTCGTAGATATCTTCTTGACAACACGTTTAAATTTACCGCATGAAATGATTATTTATGGAACTGAAGGTCGTCTAATCATTCCACATTTTTGGAAAACCACTCATGCAAAATTGGTGAGAAATGATACTAGTGCGCAAACGATTCAAGTTGACATGGTTAGTGATTTTGAGAAAGAAGCTTATCATGTTAGTCAAATGATT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //