Array 1 4250-4398 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYG01000016.1 Cronobacter sakazakii strain MOD1-GK1026 csakGK1026_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4250 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 4310 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 4371 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 148206-147078 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYG01000009.1 Cronobacter sakazakii strain MOD1-GK1026 csakGK1026_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 148205 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 148144 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 148083 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 148022 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 147961 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 147900 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 147839 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 147778 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 147717 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 147656 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 147595 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 147534 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 147473 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 147412 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 147351 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 147290 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 147228 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 147167 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 147106 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8833-6181 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYG01000029.1 Cronobacter sakazakii strain MOD1-GK1026 csakGK1026_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8832 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 8771 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 8710 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 8649 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 8588 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 8527 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 8466 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 8405 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 8344 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 8283 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 8222 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 8161 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 8100 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 8039 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 7978 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 7917 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 7856 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 7795 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 7734 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 7673 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 7612 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 7551 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 7490 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 7429 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 7368 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 7307 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 7246 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 7185 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 7124 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 7063 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 7002 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 6941 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 6880 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 6819 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 6758 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 6697 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 6636 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 6575 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 6514 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 6453 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 6392 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 6331 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 6270 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 6209 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //