Array 1 153666-155009 **** Predicted by CRISPRDetect 2.4 *** >NZ_AERI01000023.1 Moraxella catarrhalis BC7 ctg00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 153666 28 100.0 33 ............................ TCAAAGTAATTGAAAACGCAGAAGGTGCACGCA 153727 28 100.0 32 ............................ ACCCTGTCAAGGCTGGAGACTTTGTACTACCT 153787 28 100.0 32 ............................ ATGACAGGGAACGGTTAAGTACAACGGCAATA 153847 28 100.0 31 ............................ AAGGAACACACCGCCCCCATAACCTCTGATA 153906 28 100.0 32 ............................ TATGTCAGTAAATCTTATTGGTGCGTCTGCTG 153966 28 100.0 32 ............................ TATTTCAGAAACTCTATCTTGAACTTCCAAAT 154026 28 100.0 32 ............................ GAATTTTCATAAGATTTCTCCTACCTAGTTTT 154086 28 100.0 31 ............................ ACATTCCAATATTTTGTTTCATCACATCAGT 154145 28 100.0 31 ............................ TGAGTATTTTTCATCATTCTTCAATCTCCGT 154204 28 100.0 32 ............................ TGATGATCTGATGTGGAAAACAATGGATAACT 154264 28 100.0 32 ............................ AGCCAACCATAAAACTCAATCAACCAACTACA 154324 28 100.0 31 ............................ GTTTTTCACCAATGCCAAACATTGCTTTAAG 154383 28 100.0 30 ............................ AAGGTACAGGCGGTAACGCTGGAAAAAATT 154441 28 100.0 32 ............................ ACCAGCTCAACCTGCATTGGGCTTCGCTTGAT 154501 28 100.0 32 ............................ TTTTGTCTTGCCGTCTATATGTATAATTATAT 154561 28 100.0 32 ............................ TTGCTAAGCTTGAAAAAGAATTTGGGCGCTTT 154621 28 100.0 32 ............................ CTGCATACACACCTGTGATTTCAATGCTGTTT 154681 28 100.0 32 ............................ TAAGTGCTGAATTAGAGCGTTATGCGTTAAAA 154741 28 100.0 32 ............................ TGTGTGATTGTCTGTTTAACACACCAGTGATA 154801 28 100.0 32 ............................ AATTCGCCCGTTTGGAGTGTAAAATTGCTTTC 154861 28 100.0 33 ............................ GCTTACAGAGCTTTCAACAGTATTAATCCGTCT 154922 28 100.0 32 ............................ TCTGTAAGCGGTAATACTTCAAGTATTAATAC 154982 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : AATTTCACCGAGATAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54935-53306 **** Predicted by CRISPRDetect 2.4 *** >NZ_AERI01000011.1 Moraxella catarrhalis BC7 ctg00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================= ================== 54934 28 100.0 31 ............................ AGGTTATCAGCGGTCGCACCGCATTGACTTG 54875 28 100.0 32 ............................ ATCACCAATTGGCAATGAAAACCCATTTTTCT 54815 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 54755 28 100.0 32 ............................ AGTTTACGAGCGTATTCAAGAGCTTTCTAAGC 54695 28 96.4 32 ...T........................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 54635 28 100.0 32 ............................ GTATTTCGTGTTTGCCTCTCCAAAAATTGAGC 54575 28 100.0 31 ............................ ATGCTGATACTACCGCCTCGGATGTTGGGGG 54516 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 54456 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 54396 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 54336 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 54276 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 54216 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 54156 28 100.0 0 ............................ - Deletion [54129] 54128 20 71.4 32 --------.................... TGTCCAATCGCTTGTATTGCCTAGCTTATCCA 54076 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 54016 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 53956 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 53896 28 100.0 55 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGTCTTCACGACCGCACAGGTCGCTT 53813 28 100.0 32 ............................ GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 53753 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 53693 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 53633 28 96.4 32 ...................A........ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 53573 28 100.0 32 ............................ GCAATGAAACACGCACGCTGACAGACGCTAAC 53513 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 53453 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 53393 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 53333 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ======================================================= ================== 28 28 98.5 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : AAGGCTTTGGCGGTATGCTGTGGCAGTACA # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //