Array 1 38727-41997 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCMC01000004.1 Apilactobacillus kunkeei strain Dan39 NODE_4_length_137114_cov_13.236, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38727 36 100.0 30 .................................... TGTTGATAATACGGTAAACTTCCCATTTAC 38793 36 100.0 30 .................................... ATAGGTCAGTGTTTTCAATTAAGCGGGTTT 38859 36 100.0 30 .................................... AAAGGCAAGTTCATTACTTGGTGCTTACCA 38925 36 100.0 30 .................................... AGAGAAAAAAGATGGCAATGACGACGTTAT 38991 36 100.0 30 .................................... GATGGAACAGATTTTAAACAGCCATTTGCA 39057 36 100.0 30 .................................... TAACGTCTCGCTTGAACTTACTGTACTTCT 39123 36 100.0 30 .................................... CTAAACGTAAAATATCAGCACCTGTTTGTA 39189 36 100.0 30 .................................... ACGTGGAATAACGTTTGCTTTTTCAGATAG 39255 36 100.0 30 .................................... TCATGGTTAGTCGCATGAACGGCCTAGGTG 39321 36 100.0 30 .................................... TGTCTTCTACAAAGTCAGCACCTTCTTTGA 39387 36 100.0 30 .................................... GTGGGTTTTCCCTAATGCAATTGTTCGAGA 39453 36 100.0 30 .................................... TGGTCTAGTAATTGGTCTTTGTCGTACTTT 39519 36 100.0 30 .................................... AGGAACTAAGTCCATTTTGCAGCCGGGTTC 39585 36 100.0 30 .................................... GATACGTTTACCGAAGCTGCTTAAAATAAG 39651 36 100.0 30 .................................... TTGGACCGCCTTGCATTTGTTGCATCTTTT 39717 36 100.0 30 .................................... CTGTTGATGAGTTAGAACTTGAAGTAGCAG 39783 36 100.0 30 .................................... TGTTGAAGTAGTAGTAGTTGAACTACCAGT 39849 36 100.0 30 .................................... CATAACGTTGATAGCCATCCAGATGATTAG 39915 36 100.0 30 .................................... TTTCAATTAGCTCAAATACACGGCTGTCCT 39981 36 100.0 30 .................................... TTATGAATATGACTGTTACAAGAATTTTTC 40047 36 100.0 30 .................................... ATTTAGACATGCAGGAATTGGTATTGATTT 40113 36 100.0 30 .................................... ATTTAGACATGCAGGAATTGGTATTGATTT 40179 36 100.0 30 .................................... ATTTAGACATGCAGGAATTGGTATTGATTT 40245 36 100.0 30 .................................... ATTTAGACATGCAGGAATTGGTATTGATTT 40311 36 100.0 30 .................................... ATTTAGACATGCAGGAATTGGTATTGATTT 40377 36 100.0 30 .................................... ATTTAGACATGCAGGAATTGGTATTGATTT 40443 36 100.0 30 .................................... TTGTAAATCGTATCTACCAACATTACCTTG 40509 36 100.0 30 .................................... GCAATTCCCTTTAGGTAACTACGAACATAT 40575 36 100.0 30 .................................... CAATTAATGTACCATAGCTAAATAATCTAA 40641 36 100.0 30 .................................... TTGGCAAATGATGAAGTCTGTTACTAACAC 40707 36 100.0 30 .................................... TGATCAGATAGCACAAATTAGACAACATGC 40773 36 100.0 30 .................................... TTTGCCAGAATAAAACACCTTTTTTACCTT 40839 36 100.0 30 .................................... TTTAATATTTACGGCTTTCAAGGTATTTAA 40905 36 100.0 30 .................................... TCACTAGTTCATCAAAACTAGCGTCAACGT 40971 36 100.0 30 .................................... TCCACGGTCATTGTAACCAACAGAGTAAGC 41037 36 100.0 30 .................................... ACAATTTGAAAAAAGTTGTTGACAAAGAAT 41103 36 100.0 31 .................................... TAATGCTCGAAAGATACTATTTAGGTGACAG 41170 36 100.0 30 .................................... TTAATTAGAAGTTATTCGGTATGTCATCGC 41236 36 100.0 30 .................................... TACAGGACAAGGAATACTTCAAACTGGTTC 41302 36 100.0 30 .................................... CATTTTTAGCTGAAAATTGTTAAAACATTG 41368 36 100.0 30 .................................... CTTTAGTCTAGTTGCAATTGCTAATGCCAT 41434 36 100.0 30 .................................... TAATTTTCTGAGAAATCATTCCAAAAAGCT 41500 36 100.0 30 .................................... GACCGTTATTTACGTTTGCACGGTGTAATA 41566 36 100.0 30 .................................... GACCGTTATTTACGTTTGCACGGTGTAATA 41632 36 100.0 30 .................................... TTTCCAATACAACTTGCAACGTGCATTGAA 41698 36 100.0 30 .................................... ACAGGACGACTAACAAAAGACGCGGAAATT 41764 36 100.0 30 .................................... TCACGGAAGAATTAGTTGCAATCTTACGAT 41830 36 97.2 30 ......T............................. GGTTAGTCAATTCAGTTACGTTTCTGCCTT 41896 36 100.0 30 .................................... AAAAGAAAAAGCGTTGATTATTGCAGCTAT 41962 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 50 36 99.9 30 GTTTTAGAAGTATGTCATATCAATGAGGTTTAGAAC # Left flank : ACGGTCTATCTACTAAACAAATTAATTCTATTTTAAAGAAGATAGTTGGTTATTTTGATAATGATGATATCGACTATATGCAAAAATCTATTTCATCGTTGAATAATTTTATTCAAGAAAAATTGTTTTTTTGGGATATACCGCTATTACTTACTCAAGATATTGATATAGAAAAAACTATAAAAAAAATGAATATTCATTTAAATCCAGACATTGAAGGAAATCCTTATGATATAATAGAGTTATTGATAAGGTTAAAAATGGAAACTCAAGATAAATCATTGATTGTTGTAAATAATTTAGCTAATTATTTGAACAATGATCAGATACAAAGTATTGAAAAACTATGTAAAGAGTTTAAGGTTCCATTATTAGATATTGAATTTGGTAAAAATAATGATACAAATAATACTGATTTTTCATTTTGTCAGTATTACTTTATAGATGATAACTTTGTTGACTGGCATCTTTAAAAATTAGATTTTGATTATAAAATATCG # Right flank : AGAGCTTGCGATATAAGCTTTTTTTTAGAAATAGATTTAAAATAAGATATATTCTATCTTATTAATTATGATTACGTTTCAGTTATCTATGATTGTAAAATGAAAATTTATAATCAAGATGTAGTGAATATTCAGATCATATGATTTTAACACTCACAATATAATCTTAATAAAAAATTAATAAACTTTACTTTTTCTTAATATTTTCGTATAATACAGAAGTAGGTAGTCATTCCAGATGATTTATCTTAATGTTTATTATTTACAACTCTCTATAAATCTAATTGTGCACCTCTCTATGTAATCACGCACAAATTAGGTTGGCCTGTCCGCTTATTGGGCAGGCTTTTTATTTACTCTATTTTATTTATGAATAATGATATACTTAATTTATTATAGATTTGGAAGATGCTATAAGAATTAAAGGAATTATATTAGCAATAATCGAATCAATTTTTTGGGGTATGTCCGGAACTGTTGCAGAATATCTTTTTGAACAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTATGTCATATCAATGAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //