Array 1 268045-272039 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIIN01000001.1 Streptococcus suis strain LSS90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 268045 36 100.0 30 .................................... ACAATCAAACTAAGGCTGAGATTGCCTTGT 268111 36 100.0 30 .................................... TATCAGCTTTCCAATGTTTCCCTTGACTAT 268177 36 100.0 30 .................................... ACGAGATAACGGCTATTTAATCAGTCGTAG 268243 36 100.0 30 .................................... TTGCTTACCTTCGTTTCTATCTTCCAATAT 268309 36 100.0 30 .................................... GTAACTGCAAGGGTTTAGACCATCAAAAGA 268375 36 100.0 30 .................................... CTGCATTATATTCTTCTGCATCAAATGCCT 268441 36 100.0 30 .................................... TTGTCAAATGTGACTGTTGTAGATGTAGCT 268507 36 100.0 30 .................................... AGAAGATGCAAAGAGATACCCACCACATAT 268573 36 100.0 30 .................................... GTGCGAACATGATTGCAGTTGACGCCTATT 268639 36 100.0 30 .................................... CTACGAGCCAGTTCGAATTCACTGAAACTA 268705 36 100.0 30 .................................... GGCAGTGGTGGAAATCCTATTGCGACTGTT 268771 36 100.0 30 .................................... AATCTTCTATTACATTAGACTTGGGCGGTC 268837 36 100.0 30 .................................... TTCAAGAAGTGAACCTGTGAAATAACTTTC 268903 36 100.0 30 .................................... AAGGTCAAGCGTAGTAGATACTCTGGAACA 268969 36 100.0 30 .................................... TCTTTTTCAGAGTTGATTGTGTGTTCCACT 269035 36 100.0 30 .................................... CTTGGTCCTTGCGGAGCAGGTCAAAAGCCT 269101 36 100.0 30 .................................... CTAATTGCCGACCCAACCGCAATGATGGCT 269167 36 100.0 30 .................................... CGTCTGAGTATTTTTAATTTATAAAGCAGA 269233 36 100.0 30 .................................... TGATTGGTCAACCTATCGAAGTTAACGAGT 269299 36 100.0 30 .................................... ATTCACAAAATTATCAATACTTATCTGCAT 269365 36 100.0 30 .................................... TTTGATAATTCCATTAGATATATAGAAACA 269431 36 100.0 30 .................................... TGACTAGCCACCAAGTCTCTAACAAACGTT 269497 36 100.0 30 .................................... TAAGGTTAAAAATTCTCGTGAGTTCTACAT 269563 36 100.0 30 .................................... AGAACGACCAGCAGAAATGCGACTTGATGA 269629 36 100.0 30 .................................... TATTGATTTGTTAAATAGTGCAAAAGCGCA 269695 36 100.0 30 .................................... TCGCCTGCTGTTACGATTTCCAACCCGTGT 269761 36 100.0 30 .................................... ACTCATTTGCTGAAAGCCCTGCTGTCTTAT 269827 36 100.0 30 .................................... GCGGGTCTTGGCATGGTGGCGCAAGCGCCA 269893 36 100.0 30 .................................... TGGGCGAAATGACAAGTTGGCCAGTTTTGT 269959 36 100.0 31 .................................... GGAGGAAGTTGAATGAAAGAAATGGATCCGT 270026 36 100.0 30 .................................... GTAACGAAATACAGCTCCGCAAGCCCCGTC 270092 36 100.0 30 .................................... CACAGGAAAGATGTGATGAATCATTTCAGC 270158 36 100.0 30 .................................... CTGTCTTAAAGCTAGGATTGTCAGGATCAT 270224 36 100.0 30 .................................... TGTACACTTGATTTCGTGGTACAAAATGGT 270290 36 100.0 30 .................................... GATGAAACAAGGACAGGCAGCTCGTTACGC 270356 36 100.0 30 .................................... ATGTATACGAAGACCTTTAATGTTCTTCTT 270422 36 100.0 30 .................................... GATACCGAGTTTGTGAGCTTTCAAAGTCAC 270488 36 100.0 30 .................................... CAAAAATTCAGGCGAAACATCAACATTCTT 270554 36 100.0 30 .................................... AACGTAAATAAGGAGCTTATAGAGTGTATA 270620 36 100.0 30 .................................... TGCTCTATTGTTCTTCTGGTGCTGGTTCTT 270686 36 100.0 29 .................................... GTAAACACGTGAGAAGCGTTGATACATAA 270751 36 100.0 30 .................................... AGCCTTTCCAATTTTCTAAACATTGACATT 270817 36 100.0 30 .................................... AAGCGAGAATTAGACAACCATTGACGGTCT 270883 36 100.0 30 .................................... TGATGTGCGTCAATCGACCATCGATTCTGT 270949 36 100.0 30 .................................... ACAATCAAACTAAGTCTGAGATAGCCTTAT 271015 36 100.0 30 .................................... TTCTATTTTTTGACGGGGTCGCTGATAACT 271081 36 100.0 30 .................................... TCTACTGAATATGCATCGGATGACACTCAC 271147 36 100.0 30 .................................... TAGTTGAGAATGACGAACTCACCGAAGAAA 271213 36 100.0 30 .................................... TTAACTATGTTTTGAACAAGCCTAACTACT 271279 36 100.0 30 .................................... TAACTTTATTTAGTAACGTTTATAACAGTT 271345 36 100.0 30 .................................... AGTGCTTGAGACGAATACGGAGGATGAATA 271411 36 100.0 30 .................................... CTACCGCTATCTGTACCTTGGCCACGCTAT 271477 36 100.0 30 .................................... GAACTCGAACGAATTCCGTGAGACATACCT 271543 36 100.0 30 .................................... ATGAACGATTGAATGAAATTGATGTCACAC 271609 36 100.0 30 .................................... CTGCAATTCGTTCATAACGCCACTGCGAGG 271675 36 100.0 29 .................................... AGCGAGGTGCTCAGCAAGTAGATAAGGAG 271740 36 100.0 30 .................................... ATAAAAAATTGATTTTTCTCCTAAAGCTGT 271806 36 100.0 30 .................................... CGAAGGCATGGCCTTGATTTATCAAAGATT 271872 36 100.0 30 .................................... AGGTGTGTAGAAAATTCTGCTGAAATAACT 271938 36 100.0 30 .................................... ATAGCATCAAATATAAAAGCACGACCTGAT 272004 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 61 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CTGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTACTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTATTGTCCCACCCTCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTAGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //