Array 1 16429-16911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIK010000003.1 Listeria welshimeri strain FSL W9-1036 NODE_3_length_420750_cov_50.878452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 16429 29 100.0 37 ............................. AGAGGTCACAGGGCAAAAGGCTGCTTTAATAGCAGAA 16495 29 100.0 36 ............................. CAGGCAAAAGCATGGCAAGACTGGAAAAACAGCTCC 16560 29 100.0 36 ............................. ACATTCACGAGGCGTTAGTTTTCTAATTCTGAAATT 16625 29 100.0 34 ............................. GAAATTGAGGATCTTCTTGCTTCTAGTATTCAGA 16688 29 100.0 34 ............................. TCTTTCAAGAAATAACTCCTTTTGATGATAATTA 16751 29 96.6 36 A............................ GTACGAGCGATTAGCTGTTGAATCACAACAGGCGCA 16816 29 96.6 37 ................T............ TAGAATTTAAATAGTTCATCTACGTTAAAGTTTGAAG 16882 29 86.2 0 .............C..A.C.........G | T [16908] ========== ====== ====== ====== ============================= ===================================== ================== 8 29 97.4 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : GTACTACATAAAATGTCACTGTGCCGTCTTTTTCTTTCTCTTTGCTGTCTGCTTTGCTCGTAGAAGTATCATTACCACAACCCGCAATCAAAAGTAATGCACAAAACACCATCATTAATTTCCAAATATTTTTCTTCATCTTTTTCTCCTTTTTTATGTTTTTTAGCAAAATAAAAACCCAGATAAATCGAAAAAACAGCCCCAAAAGCCAATTTTCGTTTTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAATAAGGATATTTGTTTATAAGATGATTTTAGCATGAATAGAAAGCGTTTACAAGTTTGTGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTAGAGACCGACAGATTTACGGGATGCATTGGGAGAGAATGAGAGTGGGTGGTGAATAGTGGTTTTAGGAAGTTGAAAAGCCGGTTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAATAGGGATGAAAATGGACGG # Right flank : GCCTTTCCATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGGATTATAAATTCATTCAGCAACTAAAACATAGATAGTAGCACTATCATAAATTTCCAGTCAATAAAAAATTAAAATCAAATCCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAATAAGTGAAAAATTTCAATTAATAATATGGCGAATGCTAAACAAAACACTAGTATTTTCAGTGGTTTGTTTTCGCTAGCATTCACTCTTTGTTTGTGTTAAATTAAACACAAACAAGAGATTGGGGATGACAAAATGAGATTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTATAGAGGTAAAATAGTCAGTTTATTCAAAATAGGAATTGAAAAATCTAGTCCAGAACGATTCAAAGATTTATTTGGTAGTAACAAGCGGAAAAAATACACTTTTTCGATATACCTGCCTGAACCTAAAAATAATAAAAATGAAATTCACCTTGAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 26682-28649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIK010000003.1 Listeria welshimeri strain FSL W9-1036 NODE_3_length_420750_cov_50.878452, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 26682 29 100.0 35 ............................. GATTTCTAGCTCTTTGATATATGTTATTTGATTGT 26746 29 100.0 37 ............................. ATCTAAGCTAATGAAAGAACTATCAACACCGGGTCGC 26812 29 100.0 34 ............................. TTTAAATAAAGAAGAAATTCCGTTCACTGTCAGC 26875 29 100.0 35 ............................. TCAAAAACTTCACTGCACTGTACAAATTATCCTCG 26939 29 100.0 36 ............................. TATGATAAAGCAGTAAAGATGTGGCACCATGGGCAG 27004 29 100.0 35 ............................. TAAGTCCCGCTCCATCCATCCTTAAAGCATTCAAT 27068 29 100.0 34 ............................. GGAAATAAGAACGCTGTTACCACCGGCGAGTTTG 27131 29 100.0 38 ............................. GAAGAAAAAACTGCATTTTTTCAGCAATGCGCAGATAT 27198 29 100.0 36 ............................. AATTTTCGTTATGAAGTACTTGAACATGTCTCTGAT 27263 29 100.0 34 ............................. TTTTTATGAATAACGTTTTCAGTCATGTTCTAAC 27326 29 100.0 37 ............................. ATCATGGGAGGGGATATCTATATTAGATCTACAAACT 27392 29 100.0 34 ............................. CTATTGCCAAAAATGGACTTTAAATCAAATCCTG 27455 29 100.0 35 ............................. TTTATACATCGCGATGGACAAAAGCTGGCAGAGCA 27519 29 100.0 35 ............................. TTTAATTCAAGCACACGAAGAACGTTGTCAAAAGT 27583 29 100.0 36 ............................. TCGTACAGCGGAAAACTTGAAACGACTGGGAATATT 27648 29 100.0 36 ............................. ATTTACAAGACTCTCTCTCTCAAAGAGAAATCGAAC 27713 29 100.0 35 ............................. CGGTCCATATCAATAAATTGTAAAGTCGCTTTGCC 27777 29 100.0 34 ............................. TTTACCGTTAATGCAGATAATGACGGAAAAATGA 27840 29 100.0 34 ............................. TTGTTTAACTTTAGCTGTTGATAAAATTAGCAGC 27903 29 100.0 37 ............................. ATCAAATAAGATTCTTTTGAATTTAACATGTTAAATT 27969 29 100.0 37 ............................. ACATTACAAATAAGTATTTCCGCTCCCAAAAAGGGCG 28035 29 100.0 36 ............................. GGTCATGTACTCATCGAAACAGAGGGCGCCCAGTTA 28100 29 100.0 36 ............................. AAACTTATTCACTTAAAAGAGCATATCAATCAACTT 28165 29 100.0 35 ............................. TTCATTCCATTTTCTAACATATACTTATAAATTTC 28229 29 100.0 38 ............................. ACTTTGCGTGCTTTTACAAACATAATTAATCCTCTCCT 28296 29 100.0 36 ............................. AGCGTTGAAAGTTGCTCTTGGCTCAGCAGCAGCTGC 28361 29 100.0 36 ............................. GTAAAACAAATTAATTAGTTCATGCAAGGTGCAAAT 28426 29 100.0 37 ............................. TGGGTAAGAAAGAAAAAGAAAAGTTCTGGGAAAAAGC 28492 29 100.0 35 ............................. TCTACAATTTCAGCAACAAAGTATTTCGTTTTCGC 28556 29 100.0 36 ............................. GAATTATTTGAAACTGATACCGCCGGAACAGTCCAT 28621 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 31 29 99.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : CTCCTTCCCTCAACAATACACCCCCCAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTCGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAATAATCCCCACACAAGCCCTACCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTAGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAAGTTAAAATAAATGCTAAAATGGTCATCTAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTCATGAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //