Array 1 304781-306401 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPNW01000056.1 Lacticaseibacillus rhamnosus strain Lrh46 Lrh46_scf7180000003675, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 304781 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 304847 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 304913 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 304979 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 305045 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 305111 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 305177 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 305243 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 305309 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 305375 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 305441 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 305507 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 305573 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 305639 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 305705 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 305771 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 305837 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 305903 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 305969 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 306035 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 306101 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 306167 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 306233 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 306299 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 306365 35 83.3 0 .......................AA.C...-..T.A | AA [306386] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 98.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : AAACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //