Array 1 55570-56696 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZA01000071.1 Pseudomonas aeruginosa strain HUM-237 NODE_30_length_77913_cov_14.684_ID_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55570 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 55631 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 55692 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 55753 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 55814 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 55875 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 55936 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 55997 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 56058 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 56119 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 56180 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 56241 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 56302 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 56363 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 56424 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 56485 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 56546 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 56607 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 56668 28 79.3 0 A..........A..C..-.....A....T | C [56672] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65869-67607 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZA01000071.1 Pseudomonas aeruginosa strain HUM-237 NODE_30_length_77913_cov_14.684_ID_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65869 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 65930 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 65991 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 66053 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 66114 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 66175 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 66236 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 66297 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 66358 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 66419 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 66480 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 66541 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 66602 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 66663 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 66724 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 66785 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 66846 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 66908 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 66969 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 67030 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 67091 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 67152 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 67213 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 67274 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 67335 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 67396 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 67457 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 67518 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 67579 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //