Array 1 127019-126198 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUG01000001.1 Escherichia coli strain MOD1-EC5036 MOD1-EC5036_1_length_357802_cov_30.8171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127018 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 126957 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 126896 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 126835 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 126774 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 126713 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 126652 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 126591 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 126530 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 126470 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 126409 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 126348 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 126287 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 126226 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154028-152718 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUG01000001.1 Escherichia coli strain MOD1-EC5036 MOD1-EC5036_1_length_357802_cov_30.8171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154027 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 153966 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 153905 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 153844 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 153783 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 153722 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 153661 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 153600 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 153539 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 153478 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 153417 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 153356 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 153295 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 153234 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 153173 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 153112 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 153051 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 152990 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 152929 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 152868 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 152807 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 152746 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //