Array 1 27136-25456 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRE01000022.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3984 NODE_22_length_77125_cov_4.0165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27135 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 27074 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 27013 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 26952 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 26891 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 26830 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 26769 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 26708 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 26647 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 26586 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 26525 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 26464 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 26402 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 26340 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 26279 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 26218 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 26157 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 26096 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 26035 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 25974 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 25913 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 25851 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 25790 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 25729 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 25668 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 25607 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 25546 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 25485 29 93.1 0 A..............A............. | A [25458] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44432-43306 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRE01000022.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3984 NODE_22_length_77125_cov_4.0165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44431 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 44370 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 44309 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 44248 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 44187 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 44126 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 44065 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 44004 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 43943 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 43882 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 43821 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 43760 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 43699 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 43638 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 43577 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 43516 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 43455 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 43394 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 43333 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //