Array 1 52-750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUZ010000016.1 Erwinia amylovora strain Ea7-96 Ea_7-96_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. TCGCTGCTTTGTCTCAATGCCAACGCCGATTA 113 29 100.0 32 ............................. CCTAACCTGGACTTCAACAACACAGATTGGGC 174 29 100.0 32 ............................. AAATCGATTATTTCATCGTTCCTGTTACAAGT 235 29 100.0 32 ............................. GATATCATCATCAAAGTCTGCGGGGGGCGTAT 296 29 100.0 32 ............................. ATTGAAGGGGAGGCGAGAGCACGCCTACAAGC 357 29 96.6 32 ............................C AATGCCAGTACGAGCGCGCCTTAAATATCTGG 418 29 100.0 32 ............................. TTGGCCACCAACAACAACGCATGGCATGTTTA 479 29 100.0 32 ............................. CCAGAGGACAACTTTCCGCCTTTTCTCTGCGT 540 29 93.1 32 .................A..........C AGGTGGCGGAATACGGCAACGAGTGGATAACT 601 29 96.6 32 ......T...................... CGGATCACCTCTTCGCCCAGCCAGCTGTTCAG 662 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 723 28 79.3 0 ...........AC..-A....C......A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : CGTATGCGGGGATAAACCGTTAGCGCCCTTCTAAGCCGTAGGTCACAGGTTG # Right flank : AATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGCCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10215-10602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUZ010000016.1 Erwinia amylovora strain Ea7-96 Ea_7-96_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10215 28 89.3 31 ......C...........G........T TTACGTTTGCGTTAACAGTAAGCTCTGCAAC 10274 28 100.0 32 ............................ GGCTAAATGCCTGAATTCAACGTTCTACAAAA 10334 28 92.9 32 ......C...........G......... ATCGCACCCCACTGATTGAAGAGCAGCACACT 10394 28 92.9 32 ......C.................T... GAGCAATATATTCGATAGACGCTGATTTGCGT 10454 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 10514 28 100.0 33 ............................ GCCAACGTTCACTGTCATTTAGCCACGCTTCGG 10575 28 75.0 0 .....A........G....TT...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 92.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCACCAGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGATTGGCGTTATAGGATGGTTGTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCGTAGTAATGTAACG # Right flank : ATGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCATCACGGGCTTCTCATCCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGTTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAATAAAGAAAGATCTTATTTTTTTCTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTAAAATTTTTTTGCTCAATAATTTCCAGAACTTTCATTTTGAGTTGGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGAATTTAATGAAATGCAA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACCGCCGTACAGGCGGCTTAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 386-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUZ010000029.1 Erwinia amylovora strain Ea7-96 Ea_7-96_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 385 29 100.0 32 ............................. ATGGCTACATCCATATGAAGTTTAATGCCGTG 324 29 100.0 32 ............................. CCCCTGCAAATCCATTGGGCTGGCGAGGGTGA 263 29 100.0 32 ............................. GTGGCTGACTCAGAGTTTGCGAGCATATCTCC 202 29 100.0 32 ............................. TCGCCGGTCAGCCCTTTGTTAATGAGTCTACT 141 29 100.0 32 ............................. CCAATCGCGTAATGTCCGATCTGCGGAGATAT 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTTGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGTGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGTCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : GCTGGCTGATAAACTTTTTGAGGTGAAAAATGCGTGTTCCCCGCGTATGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32400-30174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUZ010000029.1 Erwinia amylovora strain Ea7-96 Ea_7-96_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32399 29 100.0 32 ............................. GCGGTCATACCGAAGCCGCAAACAAAGATAAC 32338 29 100.0 32 ............................. CACTCATCACGTCCTCTTCTATTCTCACTACG 32277 29 100.0 32 ............................. CCGTGTTGTGTTGAGCTGCAAGCGCGACGTAA 32216 29 100.0 32 ............................. CTCTTCTTTCAGACACTGCCAGACGTCTTCAC 32155 29 100.0 32 ............................. CAGCTTGAAGACCAATATGCAGAGACATATAG 32094 29 100.0 32 ............................. TACTGCACTTGTAGCATCAAAAGGCCTAGCAA 32033 29 100.0 32 ............................. GCAGGATTATCATTGTTGCTGGGAAAGAAATT 31972 29 100.0 32 ............................. GTATTTATGCATGGCCTCTTCATCACCTCGTG 31911 29 100.0 32 ............................. GTGGCTGACTCAGAGTTTGCGAGCATATCTCC 31850 29 100.0 32 ............................. ACCCGTCAACACCGCTTCGGCTGGAAACAATC 31789 29 100.0 32 ............................. GCAATGGCGGAGCAGAACACACTGGTTCAGGC 31728 29 100.0 32 ............................. CCCATTTACCGCTTTTGTCCGTTGCGCTCGCG 31667 29 100.0 33 ............................. CACATCGATCACGCCGCAATAGTCGCAGCACTG 31605 29 96.6 32 ............................T AAACTATTTTGTAATAATGAGCGGTCGTAATC 31544 29 100.0 32 ............................. CGCACGCGGCAGATCCTTAAATATGATATCGC 31483 29 100.0 32 ............................. GTGCATGGCCATTCAGCTTCAAAGAGGCGCAA 31422 29 100.0 32 ............................. TGCGCGATGGCTATGGCTCCGGCAATTGCTCC 31361 29 100.0 32 ............................. ACAGCAATCATTCATTGAAAGTGCAATTGCAG 31300 29 100.0 32 ............................. TACGCATTCGCTATAAATATACCCCGGTGCCG 31239 29 96.6 32 ............................T TCGATACTGGTAACACCAATTTCAGCATGCAC 31178 29 100.0 32 ............................. GGCGCGGGCAGGCAATGAATAGATCAATGACA 31117 29 100.0 32 ............................. TCTCCCCCGGACTTCTCTTTCTTGCAGGTCAG 31056 29 100.0 32 ............................. CCACTAAATGCGAGTGGATGCGGCTGGCTCAG 30995 29 100.0 32 ............................. ACATGGTTCTCATAGCACAATCGCTTATAGCG 30934 29 100.0 32 ............................. AATGCTTCACCGCCCTGCATGACTACTGGACT 30873 29 100.0 32 ............................. TACGGCACGCGCACCGCTGGCAGACCGCCGAT 30812 29 100.0 32 ............................. GTGGCTTCCGCAGCATTTTTAGCTATTTGCTC 30751 29 100.0 32 ............................. GCATGTGGGACGCGATTGAGGGGATTGGTCGA 30690 29 100.0 32 ............................. CAGCTTTGAGCTGGCGGAAAAGATCATTGAAA 30629 29 100.0 32 ............................. GCGATCTTATGGCGTTTGGAGAAAAAATAATC 30568 29 100.0 32 ............................. TCAATTGCACGCTGCCGGGAATCAAACCCAAT 30507 29 100.0 32 ............................. CAAATATCGCAAAAAACCAACTCATTGAGATG 30446 29 100.0 32 ............................. CCAGCTGCGCTCGATGGTGCGTCCGTCCGTGG 30385 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 30324 29 100.0 32 ............................. CTCTTTAGCCAGGTTCTTTAATCCCTTAGTGA 30263 29 100.0 32 ............................. TAATGGTTAAAGTGAGCGGTGGCGGAACGACC 30202 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCTTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //