Array 1 12679-15273 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDO01000051.1 Secundilactobacillus hailunensis strain 887-11 scaffold51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12679 28 100.0 33 ............................ TGGCAATTACATTATCCAATGGTAAAGAAGTCA 12740 28 100.0 33 ............................ CAACAATTCCCGGTGTTGTGGTAGCCGTAACCG 12801 28 100.0 33 ............................ CTTTCTTAGATCGTGCAATTTCAGCAGCATGTT 12862 28 100.0 33 ............................ CGTCATCAAGTTTCCTAAAGACGATGACACCCT 12923 28 100.0 33 ............................ TGAGCGATTGAATACCACTAGAAGCTGATTTTT 12984 28 100.0 34 ............................ CGAAACCACAAGCTGATCAAATTCATCAAAAAGA 13046 28 100.0 34 ............................ CGATTGACTTAACGGTATCAAATACTTTCTTAGT 13108 28 100.0 33 ............................ TTATTTATTTTTGTCAAATTGTACTTAATCACT 13169 28 100.0 33 ............................ TGAAATTATGGCACAAAAAAAGAGCCCCAGGGG 13230 28 100.0 33 ............................ TACCACGATTTCCTGCGGTGTTGTAAGCAAAGA 13291 28 100.0 33 ............................ CAAACGCGATTCAATCAATGTTACCGCCAGAAT 13352 28 100.0 33 ............................ CAGTTGGGACAGTGTCAAAGTTGTTTGCTCCAG 13413 28 100.0 33 ............................ TACAGTTATTCTAGCATGACTGGTGTGATTTTG 13474 28 100.0 33 ............................ TCAGTATCTGAAACATAAACGTCGTTTGAATTA 13535 28 100.0 33 ............................ CATGCGATTAAAGACGGCTGAGAAACTTGGCGA 13596 28 100.0 33 ............................ TATCATCCTGTGTGTAGGTCTTGCCAGATGGCT 13657 28 100.0 33 ............................ TGACGGCCATGACTCACCTGAAACTGGCAATCG 13718 28 100.0 33 ............................ TGGTATTCAGAATTTAGCTTCAGGTATTTGGAG 13779 28 100.0 33 ............................ TTTCGTTGCCGGTATCATCTTTGGCGAAGACCC 13840 28 100.0 33 ............................ TTGTTTCAAAATCCATTTTGATAGCCTCCTAGT 13901 28 100.0 33 ............................ CAACCGATGATTATGATACAATTGCTGGCTTGA 13962 28 100.0 33 ............................ CATAAATTGGTACCGTCTCAGCCCGATCAAACG 14023 28 100.0 33 ............................ CATCGTACTCAGCTATCAGTGACGGGATTCCCG 14084 28 100.0 33 ............................ CAATATTCGATTTCCTCTAGCTGTGGCTCTGCG 14145 28 100.0 34 ............................ TAGTTAAGTCTTCAGCTAATTGATCGTTCATAAA 14207 28 100.0 33 ............................ TAAGCATGGTATCACGGCACAGGAAGTGGATGG 14268 28 100.0 33 ............................ CCAGTAGTTTGCAATGATTGAGTAACAATATTT 14329 28 100.0 33 ............................ CGGTTTTGTCCATTAATCCCCATGGGCCACGAG 14390 28 100.0 33 ............................ CAATTGAGAAAAGAGAAGTAACAATCTTATTCA 14451 28 100.0 33 ............................ CAATGTTCAATCCGAACAAATCATCAGCAGTTA 14512 28 100.0 33 ............................ TAAGAAAGAGCTAGACTATGTCGATGTTTCCCG 14573 28 100.0 34 ............................ CTTTTTTGCGAAAGGTATTGACGAGGGGCAGATA 14635 28 100.0 33 ............................ CAGTTAATTGTCGATTTGAGTCGGTTTCAAGAG 14696 28 100.0 33 ............................ TAGGCTGGTATTATAATGACCGGGCTGTTCCAG 14757 28 100.0 33 ............................ TAATGATTGATTATGGAGCTTTAAATGAGTTGG 14818 28 100.0 33 ............................ TATGGCCAAGGGTAACTGGGTTTTAGATCCTGA 14879 28 100.0 33 ............................ CTGGGCGTTGTACGCGTATTTAACACAATTAGG 14940 28 100.0 33 ............................ TGAGGCTAGTCAGGAGGCCATTAATCGCTTATG 15001 28 100.0 34 ............................ TGTTAAGAACCTACTTAGCATCAACAATGGGTGG 15063 28 100.0 33 ............................ TAATCACATTGTATTTTTTAGAATCGCGTTCAG 15124 28 100.0 33 ............................ TCCAGAGGTTAATACTTTCCTACTTGCCAAACA 15185 28 100.0 33 ............................ TAACACCTACATTAAGCGCATCATTGTTACGGA 15246 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 43 28 100.0 33 GTATTCCCCGCATGTGCGGGGGTGATCC # Left flank : GTTGCTACAGATAACATAATAGCGATTGGTGCTGTCAAATCGTCCGGTATTGCTGTTGAAAAATTTTATCAACTGATTAACATCAATCAAAAAATTCAGGCAGCCGTAACAAAGTTAACTACTTTAACGTCAGAACAATTGAATTCTGAGGGTATATCTTTAGAAGATGCCCTAAGTGGACTTCAAAAATTTATTGGTGACTCACCTCTGATTGGATACAACGTTCACTTTGACGAAAGTTTCTTAACGGCAAGCTTTCGAAAAACTAGGTTGTCAATTTTGGCCAATCATTTTTATGATTTGATGCCCGTTGTGAAAAAAAATAACCAATTTTTAGATAATTACCGGTTAAAAACAGTGTTGGAAACATATAAAATTAAAAATGAACATCCACATAATGCATTGGCGGATGCTCAAGCAACTTATGAGTTAGCAGAGCAACTCATAAAAAAACGGGTTTTGCGATTTTAAGAATGCTGCTATAGTGGGATTTGTTTAGT # Right flank : CGAACAACTGTCAACGCCGATGTGAAAATGTCGTTTTTTGCCGATTAAAAAATGCTGTTTTTTACCGATAAGGTTTACAGTGTCTCACTGCTCCTTTCTTTATTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCATGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2822-3213 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDO01000012.1 Secundilactobacillus hailunensis strain 887-11 scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2822 28 100.0 33 ............................ TTACTTGGCTAACCGGCGGGGGCTTCACCCTGC 2883 28 100.0 33 ............................ TTGAACGATGTCAAGCGCCTGAGGAACGCATTC 2944 28 100.0 33 ............................ TAATAATGACTTGGACGAAATACGTAACTGATG 3005 28 100.0 33 ............................ CTTTCAAGGTCAATCAAAAGAGCTTCGCCACTT 3066 28 100.0 33 ............................ CACCTTGCTCAAATCAGCTTGTTTGGTGTTGGA 3127 28 100.0 33 ............................ CTTCATTTGATCTGTTGTCATGGTCAACGCCCC 3188 26 85.7 0 ............-.........-...AA | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 33 GTATTCCCCGCGTATGCGGGGGTGATCC # Left flank : TAACAACTTTACATAAGCTTGTTTAATAGCAGGCAGTTCCTCCGGGTCGGCCTGGATGTTCCAGTAGATGGCATTGGCGGTCTCATCGCCACCGTCACCGAACTGATACTCATCATCTCTCAGCCCCGTGGTATCGAGCCAGCCTTCAAATATTTCCGTTTTAAAGACGTTCAGGAGCATTACAATGGTCGGCGTATCCAGGCCTTTGGCTTGAAAGTAATCGACGACTTCATTGATGAACCAGTCCCGTCCGGCGCTTAATTTATCTAAGGTAATATATTGGCGCATTATTACTCACTTCCTTGGTGGTAAATCAGCCGTATTATTGACACTGTTTTTAACGCCTGGCACTGATACATTGGGTGCTTTGGGAGCTGCTTTTAATGGAGCGGCCGAAGCTGGATGTTTCACTAACTTATGTAAAGCGCCGGATAATTTACCAGCTGGTTTAAGACCAGGCGCAGGCGTAGCGTGTTTAGCTGAATTATATTTCAGGCCAA # Right flank : ATTTCACCTATAAGATATATATGGAAGTATTCATTACCTATGTAGAGAAGTTTTCAGTATGATAAAGAATGAGCCAAAGTTTGGGAAAGGAGAAAGCTTAATGGCTGATAAGCAACTTCAAACTTTTTCAAATAATAAATTACTAGTAGTCACACAGTATTATCAAGAACAGCTTCAGTTAACTAATCGTGCTATCCTAACCATCATTAACTATGAGCCAACGACAGAAAGCCAGTTTTTCGCTGGCAAAGCCAACCATGTAGCTTACGAACAAGTTGCACAGACGTTAAAAATGATTTTTCAATCATTAGCGCAACATCCGTTTAACGTGGCTGATTACTTACAGCAATTACGAACTTTACCACCGCATAATATTTTCTTACGCAATCGCTATGCCTTCTGGTTTAGTAATTTCGTTAACGCTGGTGGTACTGAAAATGACCTGATTCAGGATGCTAAAATGAACGGAACTGACATTTTGGAGCAAATTGTTTGGAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 131-1419 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDO01000077.1 Secundilactobacillus hailunensis strain 887-11 scaffold77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 131 28 100.0 33 ............................ CAATGTTAACTTGATTTTTGTAAGCGGTTCGGG 192 28 100.0 33 ............................ CAGCGTACCACAACTTCACAATGTGCGGGTTGG 253 28 100.0 33 ............................ TAACACTGTCTGGCAGGTCATCATAATAAACGA 314 28 100.0 33 ............................ CTTTTATGCGCCGCAAGGTCTTGTGATCCTGAA 375 28 100.0 33 ............................ TGAGCTATGTAGATAATGTTAAACACTTTTTTA 436 28 100.0 33 ............................ TTCAATCGTGAACAGAACTTGCAAGGCGTCTAG 497 28 100.0 33 ............................ TGAATCCATGTTCGGTATACCATTCAATCTTTG 558 28 100.0 33 ............................ TGAATCCATGTTCGGTATACCATTCAATCTTTG 619 28 100.0 33 ............................ CTAGCAGCATCGGTCGGTTCGCTATATGTGTCA 680 28 100.0 33 ............................ CAGGTCAAGTTCAAAAAGCGACTAACTACAAGG 741 28 100.0 33 ............................ TGTACAATCCTGATCCTTGTGCTTCTCCATAAC 802 28 100.0 33 ............................ TAGTGGCGCTAATTGTTGGATACTTAACTTGTG 863 28 100.0 33 ............................ TTATCACCGGTGCCATCGCCAAACTCAAATTTT 924 28 100.0 33 ............................ TAGGGAGATTGCGGACAGGCAGGTGGAAAATGC 985 28 100.0 33 ............................ CTCAATGACATGCCGTGGGCCAGTTTTGATAAG 1046 28 100.0 33 ............................ TGAAAGACTATAAAAAGTTAGATGCACTTAGAA 1107 28 100.0 33 ............................ CGGAAACATCAACCCCGAAAATTGATTGAAGTA 1168 28 100.0 33 ............................ TGGGATTCTGGCGAAACCGACGATGACATGTTA 1229 28 100.0 33 ............................ CCATGTTAGGGTTGAGCCGGTTCTTTGCCATGT 1290 28 100.0 33 ............................ CGAAACTTGCCAAGTGCTTAGTGGTTTGTTTTG 1351 27 75.0 14 ...........T...-T.T.AT..T... ATAACTGTTAATGG Deletion [1392] 1392 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.9 32 GTATTCCCCGCATGTGCGGGGGTGATCC # Left flank : CCTCCAAATTTGAGATGCGTTTATTTTACCGTAAAAAAATGTTGGAAAACCGACATTTTCTAATCGGTATTTTCCAACATTTTACAACCGTTGCTGACAAACAACCTATCCCGACAAACTGGCAGCTATTG # Right flank : CTGAAAAAGTCATATAACGAATCAGCAACATATTGTATTCCCCGCATTAAAGCTGAACAATTAGCCATTGTGACGATTGAACTGCGTAATATCTTAGCCGTCTTTGATAACAATCCAGTCTTAGGACAACTAGCCAGTCACGATATTGACTCTATCCAATTGAAAAATATGGGCTGTAAAATTTCTGGTATTGGTGACCACACCAATACTAGTTTTTTTGGTGCGCCCGGCATGGGCGCCAACTAGACGGTGAAAGTCCGTTGCGGGCCGTAGTAGTCGGAACCGCAAGTCAATGACAAGGGTGTCCATCGTGAGGTGGAATCTGAAGGAAGTCGGCGACAAAGTACCGCATTGATGTACAAGAATCAGCTATAAGGCTGTGTTGGTCGGACGAGGTTGCCAAACAAACCAAAGTCCAATACTACTCGAGGCCATCGCAGTAAAGCTGGCAATGACATGGTACGAAAGTGGGCGTTCTTACCCGGGGAGGCCTGTATCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCATGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //