Array 1 182349-181040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTDO010000004.1 Enterococcus faecalis strain HC_NS0787 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 182348 37 97.3 29 ....................................C ACCTTTTGGCGTTGCATTGGGACGTCTCC 182282 37 100.0 29 ..................................... ACAACGCACGAGAGCGTGTAAAAGACTTA 182216 37 97.3 29 ....................................C AGGTGAAATATCATAGTTTACCTTCCTGT 182150 37 100.0 29 ..................................... TCTTAATCTTCATCGCTTTCACCTAATGT 182084 37 100.0 29 ..................................... CGATATAAGCATTTTGTATCGTCCAATGT 182018 37 100.0 29 ..................................... CTTTACCTTCTGTGAAAAATGGTTCCTGT 181952 37 94.6 29 .............................G......G AACAACGTATAAGTTCGTATGTAGGGCTT 181886 37 100.0 29 ..................................... GCGAATCTTTGGCATTCTATCACGAAGCT 181820 37 97.3 29 ....................................A GTTAGAGCCGCTTAGATTCTTAGAGAAGC 181754 37 97.3 29 ....................................A CGTGCAACATTATACGCTGCCGACTTATT 181688 37 97.3 29 ....................................G ACATGGTAGCGATGAACGATTGCAACAGA 181622 37 100.0 29 ..................................... AATACAACTTTCTCACCATCACGATAGTT 181556 37 97.3 29 ....................................A TCTTCACCATTGAAAGCACCTTCTTTGTA 181490 37 97.3 29 ....................................A AATGAAGTCAGAACGTGAACGACTTGAAA 181424 37 100.0 29 ..................................... TTTACAATATGAACAACGAATTAACCTAT 181358 37 97.3 29 ....................................G CAATATCTTGGTACGTCATTCAAGGTTGC 181292 37 100.0 29 ..................................... TGCGGTATTATTCGTAGGTTTGCTTTTTT 181226 35 81.1 114 ......................TT.--.CG......G ATATGAATGATGTAAAAATATCGTTAATATGTATAAATGTGATTGTTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTA T [181194] 181076 37 67.6 0 A...........C...A....TT.CTT...G..T.GA | ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 19 37 95.9 34 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTAACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : GAATACGATTATCTATAAATCAAGAACTAATCCCCAATTTATTGAAAATGATACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTTCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAATCCGCTCCCCGTTTCACCACAGGCATATTCGTAATAGCTAAAATGAAGAGGGCTAAGAAGAAAAGTGCCAGGATTCGGAAAGTAAACCATTCTTTAAAGAGTGTGTCTAATTGTAAACCACTTTCCAACAGAATAATTAAGGGCATATGCAAGAGATAAGGGTAAAGGGTATCTTTTCCTAGGGCGCTTAAAGGTAACTTTCGTTTCGGCAATAATGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 193566-193734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTDO010000005.1 Enterococcus faecalis strain HC_NS0787 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 193566 37 100.0 29 ..................................... TGAATTTGCAAATGTTTGCTGATGGTGGG 193632 37 100.0 29 ..................................... TATACTGAAATGATTTCAATAAACAATTC 193698 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA # Left flank : TTCTCGCCAATGTTACAATATCAAACATATTATTTCCTCCCTGATTTGCCTCCACACAAAGAAACAAGCTTACCTGAATTGTTCATTTCCATTAGCGATGACTCCTTTTATCTACGAAACTAAAAGAAAATTCAAGTGAACTTTTCCAAAAAGTGTGAAAATGCATGTAATATAGAATAATTCCAATCTAAGTATACAACTTTCTGAGGCAGAAACCAAACAATACAGAAGCATTTCTCACAATTTTTTTAGGTGCTACCAAGATTTCTTCCCTTTCTTCTATCAATAAAAAAAGCCCTTCCTAAAAAAAGGAAGAACTAATCTCAATCTATCAACATTTTGACTTATCACTTGATTAGCTTCCAAAAATTGAAGCAGCTCGTCTTTGATGATAAAAATTCTAATCTTGTGATGAAAATTACGGATTGCTTGAGGTGATAGTTTGTTTTTAAACAACATGACTATAAAACAAGGGAGAAAAAGCCAAATCAAAAAAGTTT # Right flank : CTCGGAGAAGTATTTTTTCTCCATGATTCCGTATTCGCATCACTTATCCATAGCTAGATTTCAGTTTAGAAGGTCTGATTTTTTTCTTCACGTTTATTATACCAAACTTTCTCCTTCTTGGCGGAAAAACCCACCATTTTTCAATGGTGGGTTTTCTTTATTTAGTAGCTGTAACAGCGAGCCAGATTTCACTGTACTTAGCTTCTGCTGGTCCTTGATATTGCGTAAACGAAATTTCTGGTGCTGCAACGACTTGGTAACCAGATGAAGGCAACCATTCAGAGAATATCATTGCCCAGGTTTCTTGTAATGTTTGTGGGAAAGGACCTTCATTTGGAAAAACCGCCCATGTATGAGCAGGTACGCTTAGTTGCTCCAAATCTTCATAGGTATTTTCTTGCGAAGTGGCAAAGCCAATCATGTGTGTCATTTCTCCACCTTCTGTTGTTCGTCCCTCTTGAAAGTCAAAAGAAGCATTTACTACTTGATGAGGATATATG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: F [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //