Array 1 967380-968994 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040564.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7699 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 967380 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 967441 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 967502 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 967563 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 967624 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 967685 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 967746 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 967807 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 967868 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 967929 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 967990 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 968051 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 968112 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 968173 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 968234 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 968295 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 968356 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 968417 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 968479 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 968540 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 968601 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 968662 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 968723 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 968784 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 968845 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 968906 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 968967 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 985127-986603 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040564.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7699 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 985127 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 985188 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 985250 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 985311 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 985372 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 985433 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 985494 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 985555 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 985616 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 985677 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 985738 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 985799 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 985860 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 985922 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 985983 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [986025] 986025 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 986086 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 986147 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 986208 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 986269 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 986330 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 986391 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 986452 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 986513 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 986574 29 96.6 0 A............................ | A [986600] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //