Array 1 4224289-4223808 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB911579.1 Salinispora oceanensis strain DSM 45547 SALPAC4DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 4224288 36 100.0 38 .................................... AGGTCGTCATCACCGATCGCATCCAGGAACGCGCCGGC 4224214 36 100.0 36 .................................... GGTGTTCACGTCGGGGTACCTCCCGGCCAGACCCCG 4224142 36 97.2 37 .................................A.. TCGTCGATGAGTCGCACGAACACGGCTAGGTCTTTGC 4224069 36 94.4 39 .............G.A.................... TCGAGCACCCATCGCGCGGCGACGGATCGTGCGGCAGCG 4223994 36 100.0 39 .................................... ACCCACGAGCACCAGGCGTCCGCGCATGACGTGCTGCTG 4223919 36 94.4 40 .............G....................A. GCCGGATGCGCACACGACGCCCACCAGGGACGTGGGCGCG 4223843 36 91.7 0 .T..T........G...................... | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 96.8 38 GCCGCAGCTCCCAACGGAGCTGCCCTTCATTGAGGC # Left flank : CATCAAAACCCGATGAACCTTGACGACGTGCGACGCTACCTCATCGCGTACGACATATCCGACGACATCCGCCGAACGAAGGTCACCAAGAAACTCGAATCATACGGCGACCGCATACAGCACAGCGTGTTCATCGTGGACACCCGGCCAGCCAAGTTCCTACGGCTCCGCACCCAACTCACCGAAATGATCGACGAGGAAAGAGACTCCGTCATCTTCTGCAACCTGGGTACCCTTCGCGAGAACAACCGTCGATCGCTCGACGTGATCGGCTGCAGCCGCACCATCACCAACCACGGACCAGCGATCCTCTGAACCACCGGCGAAGCCTGCGTCGTCTCGCCGCCAAGCGCGGACCCGTCGCCAGGGTGTCAGCCCAGCTCACATGCCGGGTAGGTCTGCGGGTACGCGGCCTTGAGCGCTACTCCGCCTCGCAGGAAGCGCACCCTTCGCAGCAGACCGGTTCAGGTGCAGGTCAGAGCGGCTATAATTCTGACCCA # Right flank : TTCAAACGTCCACACCTTGCTCTTGGTGCCATACGAGTGTGTTCCCTTCTACGGCCCGCCCCTGCGTCCGCGCTGCTGGTGATACGAGGGCTAGCGAATCCGGCCATGATCAGGGGATCATCCACAAGCATCGGAGATATCCGACAGCGCAGGACCGGCGCTGGCGAGCGGTCGGGCCTGCGGCGAACCTGAACAGGTCGACGAGGTCACCGCTCGGCTGCTGGCCACGGCCACGCGCAGGTGGAGCAGCCTTGGCCGCAGGCCACCGACAAGCTGGTCCCCGCAGCGATACGCCAGTTGCGGGGACCAGCCCGTGCAAGGATAAGCCCGGTCAGGCGCCGCACCGTCGACCTCGCGGGGTATTAGTGGTAGCGAGGGCATCCCGGTGTCACTTCAGTGACCGATCCCCCACCAGTCGTGCAAGGAGAAGCGTTGTTTCTCTTGGTGGAGGCGGATCACCTCGGCGGTGTAGGGCATGGTCGGGTCGGGTAGCTCGTCTG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAGCTCCCAACGGAGCTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 4280197-4277424 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB911579.1 Salinispora oceanensis strain DSM 45547 SALPAC4DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4280196 30 96.7 32 .............................G CACCGACTTGCACGCGGCTCGACCCCCGCTCC 4280134 30 100.0 31 .............................. AGTACAACATCCCGCAGTTAGTCGCACAGGT 4280073 30 100.0 31 .............................. TGGACGGTGACCTCCGACACGCGCGGCTCGT 4280012 30 96.7 31 .............................T TGGACATCGCCTCTTTTTGTGATGTGTCGAG 4279951 30 96.7 31 .............................A CCATCTTGGCCCGGGGCATCGTCGTGCGAGG 4279890 30 96.7 31 .............................T ACTCGCCGAGGAGCGCGGCCCGTTCGACAGT 4279829 30 100.0 31 .............................. GGTTTTCAAGCACGGCATCCTGTCGAGGTAC 4279768 30 96.7 31 .............................G CTTGGGTCCGAGCCATCCAGGCAGCATCACC 4279707 30 96.7 31 .............................G CCGTAGCCGGCGGCAGAGACCAGCACGACCA 4279646 30 96.7 31 .............................T AGCTGGTGTGGGGTGGTGGCGGCGTAGTGCA 4279585 30 93.3 31 ............................TT GTAGTCATTTCCGGCCGTTAACCCTGTCACC 4279524 30 96.7 31 .............................T CCGATCAGCCAACGTTGGGCCAACCAACGTT 4279463 28 90.0 31 .................--..........A TCACGACCGGCCTACTGTCGATCAAGGACCC 4279404 30 100.0 31 .............................. CTTCCGAGTACGCGCCGGAACCCAGGACCAG 4279343 30 100.0 31 .............................. AGATCGACTACGTGGTCGACTCCAACGCATT 4279282 30 93.3 31 ............................AT CGTGTCCTGGTCGTGGGCGTACTCGGCGGTG 4279221 30 96.7 31 .......................A...... TGATCCGTACAGCCCGGGGCCGGTGGGTCCT 4279160 30 96.7 31 .............................T AGGTCGTAGCCGATCGTGCACGCTTCCTTCG 4279099 30 93.3 31 A............................G TGTGCACCCGGCCGGGGTAGAGCAGGCACCC 4279038 30 96.7 31 .............................T TGTAGAAGGCCCGTTCGGCGAGCGCGCGTTG 4278977 30 100.0 31 .............................. CAAGAGTGACCCGTGGGCACCGCCCAGTCGC 4278916 29 96.7 31 .................-............ AGTACGACGATCTGCGTCGGGCGGTCGCGGT 4278856 30 100.0 31 .............................. ATCCGAGGCCCTGGCGGTGGCGTTACGGGCG 4278795 30 96.7 31 .............................T AGACGACGGCCTGCGGGGTATCGGGGTCGGG 4278734 30 100.0 31 .............................. CTCCGACGGCATGCAGTGGCCGCCGCTGATC 4278673 30 96.7 31 .............................A CGCGGGTGGCGCCAGGCGGTCCGATGGCGAC 4278612 30 100.0 31 .............................. CAATGGGGTTCGCGGTCATCGCCGCGTTGAG 4278551 30 96.7 31 ............................C. CAAGTCCACCGCCCCGCATCAGTCGGCCGCT 4278490 29 93.3 31 .................-...........T TGATGGATGTCCCGGATCCGGTCGCGTTGGT 4278430 30 100.0 31 .............................. TGGGTAACACCGTCGGGGAACGCGGCGGGCT 4278369 30 100.0 31 .............................. AGAGGGTGTGTCGAGCCGTCCCGCTCGGTCG 4278308 30 100.0 31 .............................. CTGTCGGTCATGTGGATGTCGTCGCTGACGC 4278247 30 100.0 31 .............................. CGGCGCGTGTCACCGCGGCCTGGTTTGACAG 4278186 30 100.0 31 .............................. GCTGCATGACTCCCAAACGCTCAGCACACCC 4278125 30 96.7 31 .............................A CTGATTCGAGTGTGCGCGCGTATCAGAAGAG 4278064 30 96.7 31 ............................A. GGTGCACGAGTGGTCGGGCCCGGATGCTGCG 4278003 30 100.0 31 .............................. GTTCTTCGGGTGCATGTACTACGCCGCGCTG 4277942 30 96.7 31 .............................A TGCCGCCTTCTGGGGAGAGGACGGCGAGGCG 4277881 30 96.7 31 .............................T CGTCCGCCTCGGGCTGTGTGGTGGTGGTCAT 4277820 30 100.0 31 .............................. ATGATCTCCGCCGGTACCTGCGTGGGGATCG 4277759 30 100.0 31 .............................. CGGACGATGGCGCGGCAACCACGTCCTGCGC 4277698 30 100.0 31 .............................. GTTCTTCGGGTGCATGTACTACGCCGCGCTG 4277637 30 96.7 31 .............................T ACGACGACCGGTACAACGACGGCGGGGACCG 4277576 30 96.7 31 ..........T................... CTGAGCTGAGCCTCAACGTCGCGCTCAACCC 4277515 30 96.7 31 .............................G CATTAGTAATGTTTTGGATCTTGTTTGAGTT GT [4277496] 4277452 29 90.0 0 .........G...........-.......T | ========== ====== ====== ====== ============================== ================================ ================== 46 30 97.4 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : AAAGGAGCAAGAAGACCCGGCAAAGCCAGCTGACCAGCGGTGTCATGCCTCAGCGAGCCATCGCCTACAACATCCTCATATGAACCAGCACTCCGCAGCGCATCGAACGCGCTCCCGTCCTTCTTCTGAAACCCCGGGGTTGCCTTGCCGACATCGTGTAACCCCGCCCAAAACATGATCAACGATTTAGCGTGGCTGTCGTCGGTGGCCAGCCCCTCCGCGATGACCCTCCGTTGGTTCGGGGCCAAATAGCGATCCCACAACGCACCAGCAACGGCCGCGGTATCAATCAAATGCCAGAGCAATGGATACGGTCTCGGGAGATGGTTAGACTTGCCCCAGATCCCAGCATCGACCCCGTCATGGTCGACCCCCAATTCGACCCCCTCCATTCGTACCCGCTCGGCAAGGGCATCAGCATGCAACCACAGCCGTACGACACCACGACTCGACCGACGCAAAACCGCGCCCACGGCTGATAGAAGCGCAGGTCACGAAGT # Right flank : CCTCGACGCTGTCCGCGCCGGTTACACCAGCGTCGGCCTGGCCGTTTCTGAAAGTCCTGGCCATACAGTAAGCGGCGTTGTGATTGGCAGGTTGTCGTGCTGGGAGGGGTGTGGGCGCGGTGAGGACAGTTCAGGTTCGTACGTATCTGGTGCGGGTGGGTCGGTTGGATGAGTGGGTTGATGCGTGGCGGAGGTTGATTGTTCCGTTGCGGCGGGAGTTCGGTTTTGAGGTGCACGGTTCGTGGGTGGACCGGGACGCGAACGCCCATATTTGGGTGCTTTCCTACGAGGGGGGTCGGTCGTTCGCGGAGGCTAACGCGGACTATTGGGCGTCGCCGCAGCGGGAGCGGTTGGGGGTGAATCCGGCGGAGTTCCTGGTGGGTGAGCAGGTCCGTGAGGTAGAGCAGGTCTTGTAGCTACTCTGCTGCCGGTAGGCGGTGGGCGGCGCGTTCGTCGGGAGTGAGGGTCCGGACGACTCGGTGGCGTGCCGCGTGCAGGAG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4289176-4291097 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB911579.1 Salinispora oceanensis strain DSM 45547 SALPAC4DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4289176 28 100.0 32 ............................ CTGATCCTCGGCGGCCTCGCCGACGCCAAGGA G [4289193] 4289237 28 100.0 32 ............................ GCGAGCGCCAGAGTACCGGCTGCTGCATGCCG G [4289254] 4289298 28 100.0 32 ............................ CTACTGCTACTTGTCTTGGCCAACCGTACGGA G [4289315] 4289359 28 100.0 32 ............................ CCGGCCTCGCCGGCGCGCTGGAGGACTGCGAC G [4289376] 4289420 28 96.4 32 ...........................C TCGACACATCACAAAAAGAGGCGATGTCCAAC G [4289437] 4289481 28 100.0 32 ............................ ACGCCGCGTGGGCAGCACGGGGCAAACAGTCC G [4289498] 4289542 28 100.0 32 ............................ GTCATCAGGACCACGGGTGACGGGGCGACCGT G [4289559] 4289603 28 100.0 32 ............................ CATCGACCGGGCCTGACAGCCCACAAGTCCAC G [4289620] 4289664 28 100.0 32 ............................ GAAACCCACAGTTGGGCGGCCCGTAGGAACGG G [4289681] 4289725 28 96.4 32 ....C....................... CCCCGCTACCCGCAGCCCGACGACCCGCGCGT G [4289742] 4289786 28 100.0 32 ............................ CTCGATGCCAACGCACCGAAGGCGTTGCGGGT G [4289803] 4289847 28 100.0 32 ............................ TCGGGCGCGGTGTGCCGAGTGTGGGTGCCCAA G [4289864] 4289908 28 100.0 32 ............................ GTGTGTGCCTTCGCGGCACCCGTAGCCGCGGT G [4289925] 4289969 28 100.0 32 ............................ TGCTGGTCCAGCCAGGTCGACGCGCCGCGCTC G [4289986] 4290030 28 100.0 32 ............................ ATCCGGGGGATGACGCTCGTCGGCGCGTATGT G [4290047] 4290091 28 96.4 32 .C.......................... GGCTCGACACCCGCACCAACCAACCATCAGAA G [4290108] 4290152 28 100.0 32 ............................ GGGAACGCGGCGGCGAGGGCGTCGGTGTCGAA G [4290169] 4290213 28 100.0 32 ............................ CCGGCTTCGTGCCGCTCGGAAGCTGGCTTCGC G [4290230] 4290274 28 96.4 32 ....C....................... GCCATCGGCTACGCCTCCACCGTCGTCTCCTC C,G [4290276,4290292] 4290336 28 100.0 32 ............................ GACCCGAAGGCCATCAGCTTCCCGGTGGATAT G [4290353] 4290397 28 100.0 32 ............................ CGGTGGGAGTTTGAGCGGGCCGTGCTGGCGTC G [4290414] 4290458 28 100.0 32 ............................ CCGAACGCGCCGGACCCGGCCACAGCCGCCAC G [4290475] 4290519 28 100.0 32 ............................ ACGGCATTAAGGCCGTCCTCCTGGAGCTGCTC G [4290536] 4290580 28 100.0 32 ............................ TCCGGCGGGGCGCTGGCGGGCACCGGTGCCGC G [4290597] 4290641 28 96.4 32 ......A..................... GCCGCTCAAAGACCACCGCCGCCTTACTCGCC G [4290658] 4290702 28 100.0 33 ............................ GCACCTCCCGGAACTAGCCGGGGCTCACCATCC G [4290719] 4290764 28 100.0 32 ............................ ATTTCCGAGCGCGGAGCGTCCAGGCCGAATGT G [4290781] 4290825 28 100.0 33 ............................ GAGTGGCCGTACGCCAGGGCGGCGCGGTGGACA 4290886 28 96.4 32 .....................G...... CGTCGCCCGGCTCGGGTTCGCCGAGAGCGTCC 4290946 28 89.3 32 ..........T............T.T.. GGCGTATGCGGGGCCTACGCAACGGCGGTGCA G [4290963] 4291007 28 96.4 32 .......................T.... CCGAGCGGGACCAGGCCCTCACCGCTGCCCAC 4291067 28 96.4 0 .......................T.... | CC,G [4291077,4291086] ========== ====== ====== ====== ============================ ================================= ================== 32 28 98.8 32 GTCCTCCCCACGCACGTGGGGTGCTCCG # Left flank : CACCGACATTCAGCGCCTACTCGACCCCGACAGCACACCCAAACAGCGGCAACCTGCGGCCGATATCACCTCCCTCTGGGATCCGGAGATGGGAGCGATGCCGTCCGGAGTCAACTACAGCTCAGACCCCTGGGACTAGCATGGCTTCCCTTGTCGTCCTGGCAACAACGGCCGTACCCGATCGTCTACGCGGTGCACTCAGCCGCTGGATGATCGAAGTGACACCCGGCATGTTCGTCGGAACCCTCTCAGCCAAAGTCCGCGACGAGCTATGGAACGCAGCAAGCAGCGTCGTCGGCGACGGCGCCGCCGTCCTCATCCACCCAGACGACACCGAACAAGGCTTCTCCCTACGGACCGCAGGAGAACGCAGACGCCGCCCGGTCGACTTCGACGGCCTTACCCTGGTCGCGATGAGCCCCCAAGAGCACCAAGGCAACCCTCCCACCCCGGACGAGAGAATCTGGCCGGACGGCTGGTAAAACCGCAGGTCAGGAAGT # Right flank : GCGTTCACGGTGAAGGCCGCAGACTTGATGGCCGTCCTCCCCACACAGGGTTTCTGGAGGCGACACATGATCGAGCCTGTGCAGATCTGCTGGGCGCCGGCGGGTGAGAGCATGCCGTCGCTGGGCTCCCACGCCCTGGCCGCCGCGCCGATGGCTCTGCGGACTTCTGCACCCGCGGTCCAGCCACCGCCGGATCGGACTCGCCTGAATCGCTCACCTTATCGGTGGCAGGTCCGCGGTGGTGCTTGGTCCTGCCACCGATCAGCGAACGGCCACAGTCGAGTCGAAGCGGTCCGCCACGTAGTTCAGCATGCTGGTCAGCTCCTGTGCGCCGACCGCATGCCCGGCCGGACGTGGCCCGTCGATCGGTAGGGAGCCGACATGGGCCCACTCCAGCCGTCCGTCGGGGCCGACCCGGCTCCTGGTCCGGCCCTGAGTGTCCGGGTGCAGGCAGTACGGAATGTCCAACAGGCCGCGCCGGAAGGCGATGTGCAGGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //