Array 1 436-943 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWSL01000021.1 Pseudomonas aeruginosa strain PAC56A IPC142_21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 436 28 96.4 32 ........T................... TGCATCCAGAAGGGGGCCGAGGTGATGTTCAA 496 28 100.0 32 ............................ AGCCCGAGCTGAGCGATATCCCCTGTCACGAC 556 28 100.0 32 ............................ GCCTACAACCTGCCGCAGATACAAGCGCAGAT 616 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 676 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 736 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 796 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 856 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 916 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGAGAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCAGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10865-9817 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWSL01000021.1 Pseudomonas aeruginosa strain PAC56A IPC142_21.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10864 28 100.0 32 ............................ GGACGGTTCCTTGACCAGGGTCACCAGGTCAC 10804 28 100.0 32 ............................ TTACAGCCGCCGGTAAGACCCGAGCCGCCAGT 10744 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 10684 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 10624 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 10564 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 10504 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 10444 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 10384 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 10324 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 10264 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 10204 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 10144 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 10084 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 10024 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 9964 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 9904 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9844 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 414613-413506 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWSL01000005.1 Pseudomonas aeruginosa strain PAC56A IPC142_5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 414612 28 100.0 32 ............................ TGGTCGTTGATGGCGTAGCCTGCTCCGAATTG 414552 28 100.0 31 ............................ CGCACGTGCGGAGGCGGGATATGGGCGGCCG 414493 28 100.0 32 ............................ GTATTCGATGAGGACAGCGGGCTGCTCGGGAT 414433 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 414373 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 414313 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 414253 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 414193 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 414133 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 414073 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 414013 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 413953 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 413893 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 413833 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 413773 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 413713 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 413653 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 413593 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 413533 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGTCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //