Array 1 1088495-1087877 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081183.1 Salinarchaeum sp. IM2453 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1088494 36 100.0 37 .................................... TGCTTGAAGACTTGCCTGAAATGCTCGGGAGGCTCTT 1088421 36 100.0 33 .................................... AGGTTTTCTTAGCGGTACGGACACACCAATAGT 1088352 36 100.0 38 .................................... TCGGGACAGAGAGATAACGGCGGAACACCTGGCAGACG 1088278 36 100.0 35 .................................... TCGCTAATGCCCAGTTGCTGCGATATGCTTTGCGT 1088207 36 100.0 35 .................................... GTACTGATATGGACACCTACCCACCAAAGCCGTCA 1088136 36 100.0 36 .................................... CTGCGACGGGCGGTTGTCCTCGTGGGTGAAGCCACA 1088064 36 100.0 40 .................................... GTCGGATTGGCTTCGTCGCAGGTCCAAACACAACCACAGA 1087988 36 100.0 40 .................................... GATTCTCCCTCCTCCAGATCGACGGTAACTGAGTCTTCGC 1087912 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 100.0 37 GTCTCAGTACAAAGTAAATTCAACAGAAATTGAAAC # Left flank : AACCGAGGATCAGCAGCACACTTGGATGCTCGAAGATGTCCGTCCATTCCGGCGGTTCGATCTCAGTCATCTCGATCACGGGTGACAATACCCTCAATAGCTACTCGAACCTCGTCACCTTCCTCGATGCCATAGTGAACTGTTCGGTGATACGGGATAACGAACTGTTGTGTGGAGATTGGTCTATCCCGCATCTCGATTATAGTGCCATCTTTCAACACAACTGAGCAGTCAACCAACGTATCCATCAACTCAAGATCCCTGACGAAAGGCATTGGAAGGACAACGTACTTTGACTTTCCGTTGTCTCTGACATCGAGTGGCTTGGTTATCATCTCAGGCTGTTCAACATGCCGATCTTCCGGTAGTCGGTACTCGTGTTCTGTACTCATAATATCTGTTACCCTCTCAGGTAGCGAAAGGATGTTGGTTCCTACGAATCAGGGTGTGAATCCTGAACCTTTCCTCGGAACACGCCCTCGTCGTCTGTACGCCGGAAT # Right flank : ATCGTCGTGACTCAGGCGTTCCTGACGCATCTTGATGGATTAGAAATCTTACCGAATATAGTTGTAACCATTATTGTGCTTGTTCTTAATAAAATCACAGAGGCGCACACATCGACTTGTTACTGTTGAGATTGTAGTCTGCTTTTTGCTTGTTTGTGCAGCCGCGAGATTCGTCTTCGAACGTATTCCTGTAGGTCATCGTCACAGCAGTAGATGTAACAGCCTTGCATTCCTCGAGTCAGTAGTGTCCGATATGTATTCTTGATTAGCTCATCAGCAAGCTCTTGCGCTTTTTCTGGCTGCTCTCTGGACATCTTCTTCATGCCATGTACTGATGAGTCCTGTCCAGCTCGTTCTCGGAAGTCAGTGACAAGTTCGCCATCTTCCATGCGAAGATCTGGACCAATGATTACCCCAACATACTCGAACTCCAATCCCTGACAGGTGTGAATACACCCGACTTCATCGATTGATCCTTCATCAATCGCCCATGGATCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGTACAAAGTAAATTCAACAGAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 1091890-1090227 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081183.1 Salinarchaeum sp. IM2453 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1091889 36 100.0 36 .................................... CCGCATCCGGACGGATTGGTGCTATACCACTGGCTC 1091817 36 100.0 39 .................................... TGCCACGTTCAATTGACTTACCTGGTGTTCTGTTGACGG 1091742 36 100.0 41 .................................... GACGGCGTTGCCGGGACGCTTGATGTGACAATGACAGAGTT 1091665 36 100.0 37 .................................... CTGTTCGTCCCATTCGGCATCCAGTACGAGCGCGACA 1091592 36 100.0 39 .................................... GATGCTGACGAAACGCGCAGCTCAGTGGTCGGTTACGCC 1091517 36 100.0 35 .................................... TGCCCGACTGCATCCGTCTGTGGTTGTGTTTGAGC 1091446 36 100.0 41 .................................... CTGTTGGAGGGCATTTCTCCATACCATATTATAGCGGGCGT 1091369 36 100.0 41 .................................... AACACCGGGGCGGCGGCCGCGGCGCCGCTGGTGTTGGGGGG 1091292 36 100.0 36 .................................... GTGAGCGGTGTTTCTCGGGCTCAGAATCGCTTTGTG 1091220 36 100.0 36 .................................... TATTCGGGTTCGCGGGACGATACGGTGATCGCGGTG 1091148 36 100.0 35 .................................... GTCACGCTGGCGACGCTTCCCGATTGGAACGAAGC 1091077 36 100.0 35 .................................... GTCACGCTGGCGACGCTTCCCGATTGGAACGAAGC 1091006 36 100.0 38 .................................... ATGATCCGTGATATAGTCCTTGACTCTGCCAAGTGACC 1090932 36 100.0 36 .................................... GACACAAACGATCCTGTTGAGGACGGGATGCTCGAA 1090860 36 100.0 36 .................................... AATATCCAGCCGGGGAGTTCGTGACTGGTCCCCGCT 1090788 36 100.0 43 .................................... ACGATGTCGTCCAAGAGTGTGTGGTCTAAGTCCATGGTTAGTT 1090709 36 100.0 38 .................................... ACATCAGTCTCATCCAGCAATCCGTCGGGTAGTGCTAG 1090635 36 100.0 39 .................................... CGCGCTGGTTGTGTTGCCGTCGTCGACCTCAGTCCAATA 1090560 36 100.0 39 .................................... CGCGCTGGTTGTGTTGCCGTCGTCGACCTCAGTCCAATA 1090485 36 100.0 38 .................................... CTCGGCCACCCACCGATTGAGCGGCTGGCCGTCGTCGG 1090411 36 100.0 38 .................................... AGCGGGGTCTGACGGCAGTGTATCTCGTAACTCAATTT 1090337 36 100.0 39 .................................... GGGAGGACGACTTTGGCGAGAGTCAGTGGTCGCTTGAGG 1090262 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 23 36 100.0 38 GTCTCAGTACAAAGTAAATTCAACAGAAATTGAAAC # Left flank : CGTTTATTATTGCAGTGTCAGCACATGCTGACAAATTAAATGATGTATTACTCTTTCGAGATACACAAAACGCAGCAGAACCGGTTGACCTTCCACAACTGACAGCCGCCGTCCCACCTCGTGCACAGGACACATTCCAAATTCTTGGCACTCAAAAAGCACCACTATCCATATCAGATATCGCTACGGAAGCTTCGATTTCTGAGAGTACTGCCAGTCGACACGTACAGATGCTAGAAGAAAGCGGATTAGTCAGATCTGAACAGGCAAGTAAACGAAAGGTGGTGGCACCAACGCCAACCGGAAAGCTTCTGATTCGGAACTCTTGAGCTGCACCATGAAACGGACTATATTCAGAGCAGCTGGCTGAAGCCAGCAAATATTGTCTAAAGATAGTGGAGGTTTATAAATGAAGTTGACAGCCCCCGGTCACGACAAACTGAGATGCTTAGACTACCTGAAAAAACTTTATAACGTTGCTACAGCAATTTGCACATACC # Right flank : GGTGTTAACAAGAGCGAGGCACTCCGCCGTATTGTCCGTCGAAATCCAGACCTTATCGCCAGCCTTCGACAGACTGGCCGGAAGCTCGCTCAGGATAAAAATGTTGCAGACGAGATTAGGTCTGTTGTCGATTATGGAAAAATCAGTGAACTGAATACTGCATGTGCTAATCACCAGTTCGATCACGTAGAAGGCGAGATTAATGCCAACTTCGACATCTTTGAGTTCGACTCAATCGACACGTACCAACAGTGTCTCAAGGTCGTTGCTCAGGCAGAAGATGTCAGTCGTGATCTCAAGCGTGCTTACGGCACGCTGTAACGTCGGATACTATTCTTCGTAGAGATTGTCGGGTTTTTCGACGGAACTCTTCGCCCACCCTTCGTCTGTCAACACATATAGCGTAACTGAGTTTGTATCCAGTGTCTTCTCAGCTAATCCTTCTTGAGATAATGAAGTCAGGTTGTTCCACGCATACTGTCGTGGAATATCATCGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGTACAAAGTAAATTCAACAGAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 3 1102312-1103167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081183.1 Salinarchaeum sp. IM2453 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1102312 36 100.0 38 .................................... TTCATCCAAGTTTACGGGGGTAGAGACATAGGCAGAGA 1102386 36 100.0 39 .................................... AGCTTGATCGAGAGATGCCGACTTACCACTACCCATACA 1102461 36 100.0 37 .................................... TCGCTTATCCCAAGTTGTTCTGAAATGCTCATTTTGG 1102534 36 100.0 41 .................................... GACGTGGATCTCTTGCCCCTGATTCCAGACGCGATCAGCGG 1102611 36 100.0 40 .................................... TGATGTGAGTGCGTCCGTGAGTGAAAACTCACAGAGGCGT 1102687 36 100.0 38 .................................... TCAATATATGGCGTCGTGACACTCCGATCATTCAGATC 1102761 36 100.0 35 .................................... ATGGCCGGTGACGCTGATCCCAGTACGACCGCTGG 1102832 36 100.0 40 .................................... GTGCGCCAGACTGCAGTGCCAGGTATGCGTGTTTGATGAA 1102908 36 100.0 38 .................................... CGAGAAGCTGAAACACATCCGCAAACGCATCTCGAACG 1102982 36 100.0 37 .................................... CGATATGGAAAGACTGTTCCCCGGTTCAAGGAACAGC 1103055 36 100.0 41 .................................... GAAGTTCAAGCGCGTGCGGTTAAGCGCCCTTGTCCGAAGGT 1103132 36 94.4 0 ...T.............................G.. | ========== ====== ====== ====== ==================================== ========================================= ================== 12 36 99.5 39 GTCCCAGCACAAAGTAAATTCAACAGAAATTGAAAC # Left flank : TACTACTGATCGAAATTTAACGCGTCGGGAAGTAATTCGACTACAAGCCCACCTCCTTCGAAAGCGAATTACATCCGATATTGACCAATACCGTTCATTCGTGATTACACAATGACCAGCCGATACGCGATCGCGTATGATGTAACCGAAGATCGCCTCCGAAGACAGATTCGTCAAGCCTGTAAGCGGTACGGAGCGCATCAGCAATACAGCCTCTTTGAGGTGAAGCTTACCCCGACCGAACGCGCGAAACTTGTAGACAAGCTTGAATGCTTTGTAAGAGAAGCACAGGAACCAGCACACATCCGAATATATTCTGTGGGCCCTCGATCAAACGATATCGATATCCCAGAGATTGATGACAGTGATGAACCAGCAAATATTGTCTAAAGATAGTGGAGGTTTATAAATGAAGTTGACAGCCCATGGTCACGACAAACTAAGATGCTTAGACTACCTGAAAAAGCTTTATAACGTTGCTACAGCAATTTGCACATACC # Right flank : CCAAACGTCATACCTGACACTGGATTATGTCCGGAAATGAGCACCCATTTTATAAGATCATCTCACATCAGCACAACATACAATGCTGACAACGCCGCGTGTCTTCGACGATGATCACCTTCCCCGCACATATCCGCACCGTGATGCCGAGCTACGCGAGTGTTTCCGTTGTTTTGACCCGGTGCTCGAAGGAAAAGAAGCTGAAAGTCTTCTGCTCTCGGGATCAAGCGGTGTCGGAAAGACATCGCTGGCTCGATATGCACTTACTGAACTGCAATCACAGGCCCCAGTCAATACAGCGCATATCCGTTGTCTTGGCAAAACACCCGTCGGAATTTTACGAGCCATGCTCGAAGAGGTAACCAGAACATCGATCCCCGAGAATGTCCCCAGCACTGAACTCAAGACTCGACTTGAGCAAGTTGATGGTCCGACAATAGTGATTCTTGACGAGGCTGATGACATCGCCGAATCAGATATTGTATCGACACTGCTCAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAGCACAAAGTAAATTCAACAGAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 1106170-1105743 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081183.1 Salinarchaeum sp. IM2453 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1106169 30 100.0 37 .............................. TGATAATTCCCATTAGTCACCACCTCCACCGACAAGG 1106102 30 100.0 36 .............................. TCCACAAGTCGATCAAGGAGGACGGCTACACACAGC 1106036 30 100.0 36 .............................. AAAACAACACAATACAATTCATGTCTCATAATATAA 1105970 30 100.0 36 .............................. AATTGTGTCGCAGAGGCAGACGAACCACTTAGTATT 1105904 30 100.0 36 .............................. GGCCTGACGGCGGCGAACTACGAAAACGCCGACGAA 1105838 30 100.0 36 .............................. ACTCGAACGACCAGACAAACAACTCCTCGCCGTCTT 1105772 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 36 GTTTCAGAAGAACCCTTGTGGGATTGAAGC # Left flank : CGAACAGCATAATCTCATCGAGCAGTATAGCGAGAACGCCCATGCTAAACGATTCGAAGCGTCTGGTGCAATTGCAGACAATGACGGATTAGTTATTGTTGACGGGAAGGAACCGGGCGGGCTTCTGGACAAAGCGTTTCGAATTAGCCAACACAGCGGAGGAGGGCATCACTACCTCACGGACGAGTTACAACAAAACCTCTCACCCGAACAGGGTGGGAATCCAGAGAAGAACGCATACCTGGGAGGTTTCAAACAAGCACATAAGTTGGATATCTCCTTGGACAGGTTCCGTGAAATTGTGGAATAACACCTACTCGTGTCAGAGGCAGTTGTGATGAATAGTACAGACAGGTTGTTAGAGTAATTACGGACTGAGCGAGCTCGAAAGAGCCGCTATACACATTGACTATGGATAGATTGTGATTCGTGAGTGCCGAGGCCACCGATCTACTGGTATCCGAAGCCTTCTATGACACGCTACAGGGCTCGAACCCCAT # Right flank : ATGAATGCTTTCGATGAATTTGTCAACAGAACGTCCCTGCTCTATGTCTTCAATGAATGGGTCTATCTGTTCTGGATGTTCACGAAAGTATGCGTCAAGATTTGGTTTATACGCTCTGCCACGATCAAATACGTACTCTTGGGACTGATATTCTTCCCACCCCCGATGTGGACCGGTGAGCGTACTGTTAGTGCTACATCCATCCTGATTGTGATATGTTGTCTATACTAGTAATAGGCGGGCGTGCAGAATAGTTAACACGGCTGTACCGGCAGATTTGGGAAATTGCGAAGAACTCAGAAATCTTCTCGGAGTTGAGGCAGGGATAGTGAAATGTGTCTACAACAACCCTGCCACATCAAGATACAATCGCAGAGGTCTTGAAATCACTGGAGACAGAGACAACAGTACTGTTCAAACATCTAGATCTCCAATTCCTCTATGAGTTCCCCGTGTTCGCCCCCGATCCACGGGGACGACCACGCGAATTCTTCCCACCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 1703044-1699192 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081183.1 Salinarchaeum sp. IM2453 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1703043 37 100.0 37 ..................................... TGGCTGAGTGTTGAGGAACTCCAGACACTCGTCGAAT 1702969 37 100.0 39 ..................................... AAAGCATGAGTCTGAAAGTACCCCCCAAATATCAAGACG 1702893 37 100.0 35 ..................................... CTGTTGCCGGGATTGTCATCGTCGCGTTGATTATT 1702821 37 100.0 35 ..................................... AACGTGAGCCACCAGAACCCGTTAGGCGTGAGCCC 1702749 37 100.0 36 ..................................... AATTAGAAAAACCACCAGAACCCCCACATTGGCACT 1702676 37 100.0 37 ..................................... GATTGTTCAGTCCGGTTGCAATAGACGGACACTACAC 1702602 37 100.0 37 ..................................... ATCTTGTATGAAGGACACGACCGCACAGATAGCAGAT 1702528 37 100.0 38 ..................................... TCGAGGAGGGGAGCGTTGCCGGGATCAGCGTGTATGAC 1702453 37 100.0 37 ..................................... ACACCGTGAAACCCGTCGGGGACCGCGAAGATATGGG 1702379 37 100.0 38 ..................................... TCGAGGAGGGGAGCGTTGCCGGGATCAGCGTGTATGAC 1702304 37 100.0 37 ..................................... ACACCGTGAAACCCGTCGGGGACCGCGAAGATATGGG 1702230 37 100.0 38 ..................................... GGGATTGCGGTTTGTGCCATGCTACTGGTGGGGTTGAC 1702155 37 100.0 33 ..................................... TCCCTGTTTCTGGTAGAAACTTGTCATGTTGAA 1702085 37 100.0 33 ..................................... TCCCTGTTTCTGGTAGAAACTTGTCATGTTGAA 1702015 37 100.0 35 ..................................... TCCGTCCGGTTTATATGCATATGTCATAGTTCCTC 1701943 37 100.0 36 ..................................... TTCACGCCGTTTGTGATTTCCTTCGTGTTGCATGGT 1701870 37 100.0 37 ..................................... TGAGCCGCTCGTCAGCGCCTTCTGCGGCTTGATACAT 1701796 37 100.0 36 ..................................... AGTTAACAATAGATTCACCAGACCGCCCGACGACAA 1701723 37 100.0 36 ..................................... AAGCAAGATGCTGCATACGCGGCAAAAACCGGCCGG 1701650 37 100.0 35 ..................................... AGATAACATTTTCAGTTGATGAGGCTGGAGAATAC 1701578 37 100.0 36 ..................................... TCATTGAGATCGACCAGGATACTATCGAGACACACG 1701505 37 100.0 38 ..................................... GAGGATGTCTATCTTCGTTGGCATCCTCAAGAGCGATC 1701430 37 100.0 36 ..................................... GGCCGACGTAGGTCAGCGGCCGTTTCCTCGCATGGT 1701357 37 100.0 39 ..................................... GTTAACAGTTGTTTGCCATTCTGGAACTTGTCTTACAAG 1701281 37 100.0 34 ..................................... GATACCATCGGAGCTGTTGAGGCCACGAACGGCT 1701210 37 100.0 37 ..................................... ACTGTCTCTGTGGTCGCCTGTTGATTTTGATCTAAAC 1701136 37 100.0 37 ..................................... TTATTCTGGATAAATTGTCGGAAGCAGACCTACCGAT 1701062 37 100.0 35 ..................................... TCGAATGCTCCACTCCTCGGGGCCGACGAGCTGGC 1700990 37 100.0 35 ..................................... AGTCAATTGAACGTGGCATGATCCATCACCGACCG 1700918 37 100.0 37 ..................................... TCCACGATCTCACACCATATCTCTTCACGTCACTGTT 1700844 37 100.0 36 ..................................... GATTTGGACTACCTAAACAACGAGATGTATCAACAA 1700771 37 100.0 36 ..................................... TATTCAAAAGACGATAGCGACGAAACAACCATTGAC 1700698 37 100.0 36 ..................................... CGCAAGAACGACCGACAAGACAATCACGATAAAGAC 1700625 37 100.0 32 ..................................... ACATCGAGATCAGTAAGTCGGCACAACCGGCA 1700556 37 100.0 36 ..................................... ATAATAATGACTGATAGAACAGACCAAACGGACAAT 1700483 37 100.0 40 ..................................... GTTAATCGATGAACGGTACTGAGCAAAATCCCGACGGCGG 1700406 37 100.0 36 ..................................... CGGGCGATGAACGGCGAAAGCCGTGGTTGTCAGGTC 1700333 37 100.0 37 ..................................... TTGCCGGAGCTGTGGGAACTGTGAGGTTCGGGTAATG 1700259 37 100.0 38 ..................................... CCGGCATGGATCGTCGCCGTCATTGTCGCGACGGAGGG 1700184 37 100.0 37 ..................................... TTGAGCGGAGAAGACCGTGGTTGTCAGGTCTGCGGCC 1700110 37 100.0 38 ..................................... TGCTGAAATAGGATATGCTGGCAGCGTCGAACTGTCAG 1700035 37 100.0 37 ..................................... TCTCTGACCCATGCGAGCATACCAGAAACGGAGTCGG 1699961 37 100.0 37 ..................................... GGCGCACCGATTACGACTGCGAAAGCCGTATCACAAG 1699887 37 100.0 37 ..................................... GGCGCACCGATTACGACTGCGAAAGCCGTATCACAAG 1699813 37 100.0 37 ..................................... GGCGCACCGATTACGACTGCGAAAGCCGTATCACAAG 1699739 37 100.0 35 ..................................... TCTACATCTCGAATATTGCCCCGATTGAATCTGAA 1699667 37 100.0 36 ..................................... GTTTATTGGACTGAGGTCGACGACGGCAACACAACT 1699594 37 100.0 37 ..................................... TATCAGGAATCGGAAACAAAATTCCGCCGTTCATGCG 1699520 37 100.0 36 ..................................... TTCTCGACACGCTCGACCTGATAGAGCAGGGCGGCG 1699447 37 100.0 36 ..................................... AGTTCGAGTTCGGTGCCGGGTTCGAGTTCGCTTAGG 1699374 37 100.0 36 ..................................... AAAACGGATTCTGTTGACAGCTCTGAGCGAAAGGGT 1699301 37 100.0 36 ..................................... ACACCCCGATTAGATGTCCTGGATGACGTACAGGTT 1699228 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 53 37 100.0 36 GTTACAGTAGGTAGAAAATCCGAGAAGGAATTGAAAC # Left flank : CAATTCCTTACTGGATTTTCTACTTGTTGCAACTCTCGGGCTACTTGCAACTGACAGCCCATCTTGTGGATGTTTCAATTCCTTACTGGATTTTCTACTTGTTGCAACGGAGTGTCTTTTTGCCGACGAACTCGATCTCATCAGAGTTTCAATTCCTTACTGGATTTTCTACTTGTTGCAACAAAATGGTCCCAACAGAGATACACGCCTTCAGTGCGGTTTCAATTCCTTACTGGATTTTCTACTTGTTGCAACCATCCAGCAGATGGAAACCCTCGTCGAGAACAGCCAGGTTTCAATTCCTTACTGGATTTTCTACTTGTTGCAACTGGGGCTGGAGGACTTCGCCGACGAACACCCCGACCAGTTTCAATTCCTTACTGGATTTTCTACTTGTTGCAACAGCGCGCATTCACTGGCGACAGGTCCCCGACTGAGAGTTTCAATTCCTTACTGGATTTTCTACTTGTTGCAACCGTTATCATCGTCCCAAGTCCACT # Right flank : CTCTTGGTCAAAGGTGTAATCAATCCGAGGGCCAGTAGCTATAATATTTAGATAACCTGTAGCAATTCGGTCGGTCGGGCTGCTCTTCAAATGAGTCAAACACCAGACACGAGATAAATAGCAAGAACAGCAAAAAGAATACCAAGTCCCTTCCGTGCAGTGAAATCCTCTCCAAGTACGAAAAACCCAATAACTGAGGAAAACACAAGGAACATTGCGAAGATAGGAGTGACAACACTGACAGGTCCAAGTGCCAGCGAATGATACAAGGCAAGAATTCCAACACCCAAGAAGAAGCCTGCTGCGAGTACATATACCATATTTGGCGACATTAGATGTTCGGAAAATTGCTGATTTGTATACCACACCACGCCAAGTGCCATCACGATGAGCAGGCCATTTGAAATGACAACAGCAACGTCACTTGGGATCGCATTTGATCCAGTCGTAGCAATGCGCATGAGTGGTGGAACAAGTGCGTATGCTCCCATCGCAAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTAGGTAGAAAATCCGAGAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 6 1703068-1707736 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081183.1 Salinarchaeum sp. IM2453 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1703068 37 100.0 36 ..................................... TCTCAGTCGGGGACCTGTCGCCAGTGAATGCGCGCT 1703141 37 100.0 37 ..................................... TGGTCGGGGTGTTCGTCGGCGAAGTCCTCCAGCCCCA 1703215 37 100.0 37 ..................................... CTGGCTGTTCTCGACGAGGGTTTCCATCTGCTGGATG 1703289 37 100.0 36 ..................................... CGCACTGAAGGCGTGTATCTCTGTTGGGACCATTTT 1703362 37 100.0 37 ..................................... TCTGATGAGATCGAGTTCGTCGGCAAAAAGACACTCC 1703436 37 100.0 38 ..................................... ATCCACAAGATGGGCTGTCAGTTGCAAGTAGCCCGAGA 1703511 37 100.0 37 ..................................... GTGGAGGACGCGGCCTCATTGAGCTCGCCATGGACAT 1703585 37 100.0 37 ..................................... GTGGCTGATAAAGTTATACACGCCAGCCAGCGCAATC 1703659 37 100.0 34 ..................................... CTGTTGAGTTCAACGCGACATCAAACACGATGTG 1703730 37 100.0 35 ..................................... AAAATTGAGTTACGAGATACACTGGCGTCAGACCC 1703802 37 100.0 36 ..................................... TGGTCTGTTAGTTCACATGTTTTTGCTACAACTTTC 1703875 37 100.0 36 ..................................... ATATTGACCGACTTCCCAATACTTCCCGGACACTCA 1703948 37 100.0 37 ..................................... GGATGACGACACGGAGGACCCAACAACGATCCCGACT 1704022 37 100.0 38 ..................................... GGGGTATGCCCCCGAACAATCCCGCGCTGACGTTGAGA 1704097 37 100.0 35 ..................................... GGTCCCGCCCTTCGCCGCCACCTCCATACCGAAGT 1704169 37 100.0 36 ..................................... CGGTTTGACGTGCGGGAATACGACTCAGATGGAAAT 1704242 37 100.0 36 ..................................... AAATTCGGTCGTTGAGGAGAAGGACCCCGAGAAAGA 1704315 37 100.0 37 ..................................... ATGACCGTGAGTAAAGTATCGCTGGGCCTCTGGTTTT 1704389 37 100.0 36 ..................................... AACCCCCGTAGGACGGTCCGACGCAAGCCATATCTC 1704462 37 100.0 37 ..................................... TATCGGCCGTGTAGCCGTGTATGCATGGTACGAGACC 1704536 37 100.0 38 ..................................... AACGTTGTCGACTCGGACGAAACCCGGTCGTCTGTGAT 1704611 37 100.0 34 ..................................... GTGGCTCGATAACACTATCTGGAAGTGGTGGACC 1704682 37 100.0 37 ..................................... ACGATACAGTAAACGCGGAACGGAAGTTTGACGATCC 1704756 37 100.0 36 ..................................... GCTCACGTTCACCCGCGCCGGGCGCGACGGCGTGAA 1704829 37 100.0 36 ..................................... GACTTCGCGTATCACGCGGGCGTCACGCCCGATGTC 1704902 37 100.0 38 ..................................... GCGAGCATGTGGATTCGGATGTGACCGTGACCGAGTGG 1704977 37 100.0 37 ..................................... ACATCGAATGACCAAATCAGACGTAGGGACAATGGTG 1705051 37 100.0 36 ..................................... TATTGACAGAGAAAGAAGCAGAGCGATTGATTAACT 1705124 37 100.0 38 ..................................... TGGGGTAATTCACTTCATCAGCCCGGAGGCCACACCTT 1705199 37 100.0 40 ..................................... AACTGGTAAAGTCAAGCGGGAAGGTAACACCAATATTTGA 1705276 37 100.0 36 ..................................... ACAAAGGCCCATACTTCACCGCCACGCTATCAGACG 1705349 37 100.0 37 ..................................... GATGACGGACTAACGCCTGAATCAGAACAGCAACAAC 1705423 37 100.0 38 ..................................... GATTGTTGGTGGGGATTTGATAGCGATTCAGGAGTGGA 1705498 37 100.0 38 ..................................... TATGCCGCGATTGTTGGTTGGAGCGGGTTTGTGTACTT 1705573 37 100.0 36 ..................................... ATGATTAATTATGCTTGGATTATGGGATGCATTCAG 1705646 37 100.0 34 ..................................... CAGTGGACTACGCCGACTCCGTTTCTGGCATGCT 1705717 37 100.0 37 ..................................... CGGTCGACACGGAAGAGGTTGAGCTGGACGCTGGTGA 1705791 37 100.0 35 ..................................... CCCCTCCCTTTCTTACCGCTTATCTGACAGAAACT 1705863 37 100.0 38 ..................................... AATCCTATGGCAGTTGCTGAGGCAATGCGAACAGAAGA 1705938 37 100.0 37 ..................................... TTGTCGGTTTCCCCGGAATGGAAGCCCATTGGGGGTA 1706012 37 100.0 37 ..................................... CGATTTTCGCAAACAAATGATCCATGATAAGCGAACG 1706086 37 100.0 37 ..................................... AAGGAACACAATACATCCTGAGGGTAGAGTTACTCAA 1706160 37 100.0 35 ..................................... CCCCTTTCTTTCTCCCCGCTTATCTGGCAGAAACT 1706232 37 100.0 38 ..................................... ATTGACTTCTATGCAGGGGAGAGGGAAGGTGTTGATGG 1706307 37 100.0 37 ..................................... ATTAACAAATTTCAATAAACCTACCTGAAAAAGTGTG 1706381 37 100.0 36 ..................................... TTTTTCATCATGGCGATGCGCGACTAACCAACTAAT 1706454 37 100.0 37 ..................................... TTCAGCGATTGTCGTCCGACCTTTGAGCTGTTCACAA 1706528 37 100.0 33 ..................................... TGAAAGTCGGCATATGCACATTGTCACAAAACA 1706598 37 100.0 36 ..................................... ATTTCATCCTCGTTATCTTCACCCTCAACGTACACA 1706671 37 100.0 36 ..................................... TGGACGACGTTAATGACTACATCGTCGGAGAGTACC 1706744 37 100.0 37 ..................................... CCGGGGCATCGAGAGACAATCACGCTGGCGTTCTGTC 1706818 37 100.0 34 ..................................... AAACAACGACGATCGGGCTTGATATCCCTGCCGT 1706889 37 100.0 36 ..................................... TTATGCTGGCGCACGCCAAGCCGAGGAAGATGATGC 1706962 37 100.0 36 ..................................... AGCAGTGATCGCAATCACGTAATCGTTTGGCGGTCC 1707035 37 100.0 36 ..................................... CGTGTCACTCCACCACTTTGGCGGTTGTCCGACGAG 1707108 37 100.0 38 ..................................... TGATCCGGCACAAACTGCACTTCGAGTTTCGGATGTGA 1707183 37 100.0 37 ..................................... TGGCTGTCCGCAATGACATATCGCATTCCGCGAGGAT 1707257 37 100.0 36 ..................................... GGCCACCAGAGTCTTTTCTGAGGCTCACAGACGACC 1707330 37 100.0 39 ..................................... AGACTGTCGAAACCCCTCGCTCCTGTCGGCGTTGGTTAT 1707406 37 100.0 36 ..................................... GAACGGAGTCGAGATTCTTGAACCAGATGATCCGCA 1707479 37 100.0 38 ..................................... AACGCAGATCTGTTTGACTTTGTTGACTCGTGGCTACT 1707554 37 100.0 35 ..................................... TCCATAGCCGTTATCGTGAGGTTCCCATATCCGTA 1707626 37 100.0 37 ..................................... TGACCGTTTCCGACACAGTGAAGCGCCAGATTAGAAA 1707700 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 64 37 100.0 37 GTTGCAACAAGTAGAAAATCCAGTAAGGAATTGAAAC # Left flank : TTCAATTCCTTCTCGGATTTTCTACCTACTGTAACGTGTAGTGTCCGTCTATTGCAACCGGACTGAACAATCGTTTCAATTCCTTCTCGGATTTTCTACCTACTGTAACAGTGCCAATGTGGGGGTTCTGGTGGTTTTTCTAATTGTTTCAATTCCTTCTCGGATTTTCTACCTACTGTAACGGGCTCACGCCTAACGGGTTCTGGTGGCTCACGTTGTTTCAATTCCTTCTCGGATTTTCTACCTACTGTAACAATAATCAACGCGACGATGACAATCCCGGCAACAGGTTTCAATTCCTTCTCGGATTTTCTACCTACTGTAACCGTCTTGATATTTGGGGGGTACTTTCAGACTCATGCTTTGTTTCAATTCCTTCTCGGATTTTCTACCTACTGTAACATTCGACGAGTGTCTGGAGTTCCTCAACACTCAGCCAGTTTCAATTCCTTCTCGGATTTTCTACCTACTGTAACAGTGGACTTGGGACGATGATAACG # Right flank : CTACCTACCTGACCGAATTGTCGGGGTCCACATCCCGGTATTTGTGATTGAGTATGACCTGACGTAACCAGTCTCGGTAGACAGTAGCAATAAGTTACAAAGGTTAGATTGTTTATCAAAATATCGAATATAACGAGCAAACTCAACAAACCAACTGTCTTTGTCTGCTTTGATTTTCAGGCATGATCTTGCTGTCTGTTGCACCAGTTGTCTCCGTATAGGTAGCAAAGGAAATCAGCGCTCTCAAAGAAAATAAGAAATTAGTTGTCGATATCAGGTTTGCTGAATAACCTGAGAAGACTGAGTCAGCAATAATCCTTGTTTCTGAAGACAAGACAGATCAGTAATCGAATGAGCCAGTGGTAGACACAGACCGGCAATCGGACAGCATCGTTACCCGAAGTGCTTCGGATGCGTCCACAGACGGCCGAGTTGACAATCCGACTATCCAAAGACATCACAATCGATCCTGACAGCGAATCGGCAACACTAACCAAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAAGTAGAAAATCCAGTAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 7 1709503-1709802 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081183.1 Salinarchaeum sp. IM2453 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1709503 30 100.0 39 .............................. CTGTCTGTGTGGCTCCGAGAATAAACACTCCTCCAGCGT 1709572 30 100.0 35 .............................. GAGAAAACACCAGATGCCTTCGGAGATCGATGCGA 1709637 30 100.0 35 .............................. GCAACGAGACCGATCTCATTGATAGACATATCATA 1709702 30 96.7 41 ........A..................... CGGCTTCGTAGCGTATTCATCTCTCGGGGTGTGTTGTTCTT 1709773 30 86.7 0 ........C.A.T..............G.. | ========== ====== ====== ====== ============================== ========================================= ================== 5 30 96.7 38 GTTTCAGATGGACCCTTGTGGGGTTGAAGT # Left flank : CTGCGGTTGTTTAAAATCTATTTTCCAGCTTCTCATCGGATAGACCCTGTGTATTGATTTTTGTGCACAGGCATTTATTGTACGGCTCTTTCCCATAGCTAAGGAGACTATCTCCTACATGGTAGTACTGTTTCTTGGCTTGTTGCCATAGCGCAGATTTACATCTCAAATCATCGTTAATCTGCTCTATCGTGGCGGATCAAAAACAAATCGTTGACTAAATCGTACTGGACTGGCTTGCTGTAATTGAAGCGCTCACTCGGCAACTGATAGGAGAATGAAACGAATCCACCCACTCATGGCAGTCGATTGAGGGGATTGCAGTCGAACAGAGACTGCAACCAAGTGAATGTCTGCTACAATTGTCGACCCACCTGCCAATTAGCGGGGATGTAAGTTGATTCATCGACTCCTGAGGGTTTGGAGATCTATTGGGGGTCGACAAAAAGACTTTATTCCAACCGGGAGATAGAATGGCTATAGCCCGTGATTTGGGCATG # Right flank : TTCTAGTTCTGCTACATCCATACCCTGTCCCATGATGCATCTCTTTTAGCTGTGTGGTCTACCATGTACTCTTTTGTCGATGACGACAATCGACTACGTATGTTTCTTTCCATTATTGATATCTGTAAGAAAATCACGAATGAACGGCTCTCAGGAGCTAACTACGCTGAAAGCAAAAAAGAATTAGTGTATTATTCGGTTATCTCGTCGTTAGTTAACCGTGTGTGTTGCCAGAACGGATGAGGAATCATCTCCCACCCAGACAACACGGACACGTTCACCGGCCTCAATATCTTCAATATCTTCTTCTTCTTCTAGTTCTTGACTAACCTCAATCGCATCACCAGCACTGTATTCATCATCTAGCCCTTCGACCCGATCAACATCTGAATCTGGGAACGCGAGATCTAAATTATTCCCGTCGATTGTTCGATCAGTTGTTTCTAGAGTGAAGGTAACCTCTTCTAGCGGAGTATTATCAGCAGCATCTACAGCAGCTG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGGACCCTTGTGGGGTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 8 2415992-2414305 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081183.1 Salinarchaeum sp. IM2453 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2415991 30 100.0 35 .............................. GCACCACAGACGTTACACTCCCACTCTTCGGTAAA 2415926 30 100.0 34 .............................. GGAATGAGTGGTGTGTCTAGAGACGGAACCTACC 2415862 30 100.0 36 .............................. ACGCTGATCAGCATTTCGGTTGCATTCTGGATCGCA 2415796 30 100.0 36 .............................. TTAGCTTGGTTATCACCTCAATGCCCGCTGAACGGA 2415730 30 100.0 37 .............................. GACTGTGCCCCGAAGTACTGCCCGCTCTGTGGTGAAA 2415663 30 100.0 36 .............................. GCCGCGTGCCAGTACGGCGGTCGGACTGTCCGACGC 2415597 30 100.0 36 .............................. GAACGGGTTGTTCGCCTTCGGAGGCCGTCGATTACC 2415531 30 100.0 37 .............................. GCTGAGCCCTACACCGAATACAACGGCTTCAATGACT 2415464 30 100.0 36 .............................. CTTTGAGTCGAACGTATCGCTATTGGGACTTAAGGA 2415398 30 100.0 37 .............................. GGGGCACAGTCGAACGTCTCAATCATATTGAACCGGC 2415331 30 100.0 37 .............................. GCTTACTCCGTCTGGAGTTGATACAATTAGATATGAT 2415264 30 100.0 37 .............................. ACAGGTTTCTGTCATGCTTCATACCCCACCCGGCAGT 2415197 30 100.0 37 .............................. GCGGAGACCTTCACTTTCTAATAGTGTCCGACTTCGG 2415130 30 100.0 37 .............................. TCGTCACGTGGCATGGACATAGCAAGCCTGACTAGTC 2415063 30 100.0 37 .............................. ATCCCCCACCAACGGCGTGAGATCCCACCAGTAGCCC 2414996 30 100.0 35 .............................. GACTACGTTGTTGACTCGAAACTCGCCCCCAGCTT 2414931 30 100.0 35 .............................. GGGAATCATTGAGAAACAACCCCCACATCGGCGAG 2414866 30 100.0 38 .............................. GTACAGCGGTGTCTCGTCTCCGTATTCAGTCGCCACGG 2414798 30 100.0 35 .............................. CTCGACCAGGAGGCAGAGTACGAGGCAACTATCGA 2414733 30 100.0 37 .............................. GACATTGCATCTACGGGTACACGGCCGACAGACCTAA 2414666 30 100.0 36 .............................. GTGATCTAGAAGGTCGGGGATCAGCGGATAGTCGAA 2414600 30 100.0 36 .............................. TGAAACACGGCCGTCAATATCAGCCTCAATCAACTC 2414534 30 100.0 37 .............................. CAAGAACCATGATTCTCTTAACCGACTTTTTGAAAAC 2414467 30 100.0 37 .............................. CCGAATGCTTCCGCACCTTCGCGATCGTGTGGTACCC 2414400 30 100.0 36 .............................. CTCGATGCGCTGGTTTTCGACCGTGCCAAGACCCAG 2414334 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 100.0 36 GTTTCAGAAGGACCCTTGTGGGGTTGAAGT # Left flank : TTGAGGAAACTGTTGAGCATCCCGAATTAAATAAAAAAGTGAGCTATCAGTACTTACTCCGGGTTGAGTCGTACAAACTCAAGAAACATCTTTTGACGGGAGAACCCTACGAAGCATTCAAACGGTGGTGGTAACATGGTTTACGTTATTGCTGTCTACGATGTAGAGGCAGATCGAACGCGGCTTTTCTTGAAATTTTTGCGGAAGTATCTGACTCATGTACAGAACTCAGTCTTTGAAGGAGAGATCACGAAAGGTGATTTTGAGAAGGTCAAGCAGGAACTTGAGTCGATGCTTGAGCCCGGTGAGTCCATAATCATCTACCAGATGAGTTCAGAGAAGTATGTCTCACGAACCGTCTACGGCGAAGATCCAGCTGAAGATAGCCAATTTCTGTGAGAGTTCATCGACCCCCGGTGGTTTGAGATCTATTGGGGGTCGACGAAAAGACTTTATTCCAACCAGGAAATAGAATAGCTATAGCCCGTGATTTGGGCATG # Right flank : AATCACTTCAACGTCGCCAGTCACGGACTCGTCCCGGTTTGAAGAAGGCGTTTTCGCTCATCCCGAGACACTGTAACATAGGGGTTTCTCGAACCAGCTGTCTGTAGGTAGTCCCTTCAGATCAGGGCAACTGCCGCGCTACCCTCCCGGGACCCCACCGATCTGTTCAGAACTGCGCGCGCGCGTAAAATTAGTAAAACTCCTCAGAACAAGATACTCCTAGCGATATCAAAGAGTGTCACAATTCCTTCAAGCAACTGCAAGAAAACGTTCAATTCTCAAATCTATTTATTAAATGACAAAATAATAAAATATGTGATCAGACATTTCCAAGAGTTGTTGGAAGGAGATCGACGGTAGATTTGATAGTCCACGAATACGACTGTCTCCTATGACGAAGTTGGTAACGTGGAATTGCAATATGGCCTTTCGCGAAAAGAAGGGACAAATTCTACGCCACGACCCGGATATATTAGTGATCCAAGAATGTGAAAGTCCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACCCTTGTGGGGTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 9 2426993-2425578 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081183.1 Salinarchaeum sp. IM2453 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2426992 30 100.0 34 .............................. AAGCTGCGTCATCAACATCTCAACGTCAGCGCGG 2426928 30 100.0 38 .............................. TTTGTGGTCGCGCTGATCTTCGAACCGGTCTTTGAACC 2426860 30 100.0 35 .............................. GGGAAAAAGGAATTGCGAGATGGTTTCACTGCCAA 2426795 30 100.0 36 .............................. GTGTCTCGGTTATAGTCTGCAAACCGGAGTGACTGC 2426729 30 100.0 35 .............................. CTTGCGACAGGACTGGCTACAGTAGCAACCATCCA 2426664 30 100.0 37 .............................. CTCGCGGAACGCCCGGATCAACTTCAGCGACGCCCCG 2426597 30 100.0 36 .............................. TTAGAATAACTCTCCATGTAGCTATTTTCTAAATCC 2426531 30 100.0 37 .............................. CACTTGTTTGGCATCTCTTCCTCATTCCCTGAGACAA 2426464 30 100.0 36 .............................. GCGCGAGCCGTTGCGATAGCTCAAGCGCGTGGTCGC 2426398 30 100.0 35 .............................. ACGTCCACAGCCACCAATGAGATGATACAGTCTGT 2426333 30 100.0 33 .............................. CATTTCATAGTTACCTTGTTGCTGTGTTAATTG 2426270 30 100.0 35 .............................. GGGAATGTCGAGGTCAGCAAGTCGGCACAACCGTC 2426205 30 100.0 35 .............................. CTCATCACCGGGATTAACCACCGGGGTCAGATCCC 2426140 30 100.0 36 .............................. GACGGCGACGGGGAGGAGCTGGCCCACGTCCAGACG 2426074 30 100.0 37 .............................. GGATTGATGGTCGATGACGAACTCCAGTCAACAGATG 2426007 30 100.0 37 .............................. ACCAGAGCGCATTTCATCGAAAGTGAAGCCATACAGT 2425940 30 100.0 37 .............................. TCCGTCAGAGAAGGTCATTTCCTCCCGGTCATCATCA 2425873 30 100.0 37 .............................. GTTCTAGTGTGCCACGAACACCAATATACTGCTCTGC 2425806 30 100.0 36 .............................. CGAGATATGTGTTCGAGCGTTCATGGTTAGGCTTTT 2425740 30 100.0 36 .............................. GCTGATCGCGTCGTGTTGGTCTGGATTGGCATGATT 2425674 30 93.3 37 ........C...T................. CCCGTTTTGTGGTCGGACCCCGACGAATGGATGGGGT 2425607 30 80.0 0 ..........A..AT.......CA.....C | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 98.8 36 GTTTCAGATGGACCCTTGTGGGGTTGAAGT # Left flank : TAAGACTGAGAACGGGCGGTAGCATTTCACACCGATAGGGATGCAGCACCGGCTACAGAATGCCGATCGTCAACTTGTGGAGTATCTAACCAATCTGTCCCGAATTGTTCAGGTTACCATTGGCTGGTGATCTGTATGAAAGTCCGTAAGCTCTCAAGCCTCGGCGTTCTCTATGAGGTTTTGGGGGATGTCTAAATTAATATAACATGCGATAGACAGAGATTCACTGGCGGACAGTTCCTCAACTATTCGCTGAGACGGAGGTAATTCATCATTGTCACCAAAACTATGGTATATTATTTCGGTGCCCATTTCTTTCAACTAGCTAATTCTTACTTTGTTGTTGTAATAGTGTTCCAAGCAGAGCAAAGGTGGTAGTTGAGGCGACGAGACGTAGGCTGATTCATCGACCCCCGGGGGTTTGAGGTCTATTAGAGGTCGACGAAAAGACTTTATTCCAACCGGGAAATAGAATAGCTATAGCCCGTGATCTGGGCATG # Right flank : ATCTGGGCATGGCTTCGTTTACAGCGGCGTGTGCAAGTTTCAGAGGAGTATTTGTGCGTTTAGAACGATGTTTGGCTTTGAGATAGCGACGGCAACTGGCAAAACTTTCACCGTTTGGAAAGCTTATAATATCGGTCCAGCGACGGCGGGTGAAGATGAATCTAATGGATACTTGTATTATACTTTCACCTTGGTACATTGAAGTTTTTAACCTATTACATTGATATATCAAATGATGGCAATAAGCCAGTCATACGAGGCAAGATAGAACATGCGGATTCTTGTGCGCTTACAGGCGCGGCACGATGCCGCATACGATAATGCATATCACCATAAGTTACAGGGTCGAATCTGGAATGCGCTTGACGAATCAGAGTACGGCGGTCTTCATGACGAGAACCAGCCGATGCCGTTTACGTATTCAAACCCCTTCCCTCCAAGAAACATGGAGGAAGGAGACGAGCGAAACCTGATCGTCGCCTCCCCTGAGGAAGAATTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGGACCCTTGTGGGGTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //