Array 1 7868-8066 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIVM01000018.1 Apibacter mensalis strain R-53146 R-53146_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 7868 46 91.3 30 AA....................C...A................... AAAAGCTTTGAGCCATATATGCATTTTGGT 7944 46 100.0 30 .............................................. CTTGATAATGAACGATTAAACGCGTTGATA 8020 45 95.7 0 ......................T......................- | TT [8045] Deletion [8065] ========== ====== ====== ====== ============================================== ============================== ================== 3 46 95.7 30 GTTGTGAATTGCTTTCAAATTTATTATTTTTGTGATACGTCACAAC # Left flank : AAGATTTATAATAAACAAATAAAAAAACAAAAAACAAGTGAAGGACTGGTTTACGAATTGAACTACTCTAACAATATCGGTGATGTGAAAAGAGATACTAGACTAATAACAAATTTTACAGATCGAATATTGAATTCTAATCAGACAGAAAAATATTTGGATACTCCAGGAGATAATTATTCTACACTTAATGATATATATTATTGGGATACCCCCGAAATCAGAGTTTTTTTAAAAGCAACCAGATCGTTAAGTAGTGATAATAAAATATTTTATGTGGTAACTGAAAAATAATATAGCTTTAAGTAATCTGCAAGTTTCGTTTTCATGGCACCTCTTTATTTTAAGGTTTCATTATTCTATACATTTAGTATGAAACTAGTCTTAAAATTAAAATTAACTATATAATTCCATAATATGTTTTAAATATCCGATGAGCTATTTAAGCTTCTTGAATTAAAAGAAAAAGGCGTTTTAATAGAAGAAGAATTTACTATTCA # Right flank : ACTTCAAAAATTTAATCCGTTGATTTGAACGGATTTTTTTTGTTCATATTTTAAATCTTAGTTTTCTCTTTTATTACGCCTACTATATTTTGTAACTCCTCAATTGTATTCGCTCTAAAAAATTCTCCTTTATAGTCTATTAGTGCGGTTAAATCTTCATCTTTGGTATCATCAAATAAGTCTTTCACATCAACACCTAAAACATCTGCTATTTTTTCTAATGATGCATAAGAAGGGGATTTTAAAAGATTAGTAACATAACTTCTATTATCTTTTCTTCCTAGTAATTCAGCAAGTTTAGCTTTATTTAAACCTTTTTGATGTAATACTTTTTCAATATTTAAACCCATATCTTTAATTTGTTTTGGCAAAAATAAACATATATGTCAGTTAAGTTTTTTAATAATTAAACTTTAACATTATTTTAACAAAAATATTTAACTATTTGTTTGTTTTGTAATATTAAAACTTTATATATTTGTTGTATAAAAATTACTAAA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTATTATTTTTGTGATACGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 129313-129513 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIVM01000002.1 Apibacter mensalis strain R-53146 R-53146_02, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 129313 47 100.0 30 ............................................... ATTTAATGATAGATATACTTTAATAGTATT 129390 47 100.0 30 ............................................... CGGCAACTCCTACCCCTAATGACTTTATAG 129467 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 100.0 30 GTTGTGAATTGCTTTCAAATTTTTATATTTTTGTGATCCGTCACACC # Left flank : TGGTTAAAATTGGTCCCAATGAGTTTAAAGCCTACGATAGGAATCCACCGCATATTTGTCCGGGTTCTAACACCGGATTGGTAGTTAAAGATGATATTTACCTCTATTGTCCTGAAGACGGAGCTAAATGGATTTTAACCACCGGCCAACCATTAGAAGTAGCTAACCGATCCCCTAAAACCTATAACGCACAACTCGTAGGAAATACGGTCATAATATCTTATTAATGTTACATAATAATTCTATTATGTATTGGTTATGTTATACATAAAAATTAAAAGCATTGCCTGAGCAACTGTGAATTGTTTTTCAAATTTATTCTACCTATTTATTCCTTATTTTCCCCTTATTTTAGGATGTGATAATAAGGAATAAAAATTATTACTTTTTGATAATATAAAATAGCATATTTATAATTAAATCTTATAATAAAAGATTCCGAAAATTATTTTTTTGTATAATAATACATCTTATTTTATATGATGAATAATCAGAAGATT # Right flank : CTTCAAAAGTTAATCCATTGAAATTCAATGGATTTTTTTACATTATTCGAATCAAAAAAATACATCTTTTTATCGTTTTACAATGATAAATACTTACTTTCTCCGATCCTAATTTCAACTAGAAGGTAAAAAGCTTCCAAATCAGAACACAAATAATTAAGTTATATACCCGAAAAAGCAGTAAATTCGAAAATCGAATTTAAAATAAATATATAGTTACTCATAGAATGCTTAATAATAAGAATCCATATAAAACTTCTATTTCAGAGTATGGTGAGTTTGGACTGATTAACCATCTTACTCAAAATTTTATTCTCAATAACCCATCTACTTTACAAGGAATCGGAGATGACGCAGCCGTGTTGGATCCAAAGGATAAAAAAATATTGGTTTCTACCGATACATTATTGGAAAACATTCATTTCAACCTGGCTTATACACCTTTAAAACATCTGGGTTATAAGTCCGTAGTTGCTGGACTGAGCGATTTGGTTGCCATG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTTATATTTTTGTGATCCGTCACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [85.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //