Array 1 453124-455188 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUV01000001.1 Ligilactobacillus salivarius strain FSDLZ17M12 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 453124 36 88.9 40 AGA..........T...................... GGAGTGATGCAAATGGAAGCTACATACATAGCTTATGACG A [453127] 453201 36 97.2 39 .............T...................... GTAAGACAAGACCTTACTTGGTTATGAGTGCAGAAACAG 453276 36 97.2 39 .............T...................... TGTTCTACCCAGCTTTCATTATATCTCAAAAACGATGAA 453351 36 97.2 39 .............T...................... ACTTGGTACGTTGATTGAGAAAGCGTTGAGAGAATACTT 453426 36 97.2 39 .............T...................... AAGGTGGGATAACATTTATTGGTTAAACTCCAAAGTTTA 453501 36 100.0 33 .................................... ATCGAAAACGAGGCTAATAAGTAATGTTTGGAA 453570 36 100.0 36 .................................... TAGAACTCAGCGAAAAAGGGTCAACCATGAAAACTA 453642 36 100.0 41 .................................... ACAAAGTTTTACTCCAGACTCTGTTGCAAACTTACTCAACG 453719 36 100.0 38 .................................... TTTAGAACGTGATTTAAAAGATAACTTTACAATTTCAC 453793 36 100.0 40 .................................... GTTCAAAGCGAATTTGATAGGCTATCAGATATCAAACGTT 453869 36 100.0 37 .................................... ATAAAATTGCAAAGAAAATTGTTAAAGAAGTAGGAAA 453942 36 100.0 41 .................................... CTGTAGGAATGGGAATGAACCGAGATCATGTAGACCATACA 454019 36 100.0 38 .................................... GGAAATGAATTTGAACGGAGAATTGGTAAACTTTTTCA 454093 36 100.0 38 .................................... AACAGTGAATTTTTCACTCTCTCTCGAATTATTTTCTC 454167 36 100.0 44 .................................... TTCATTGATATGTTGGTTAAAAATAATGATGGAACGTTTGATAT 454247 36 100.0 39 .................................... GAAGAATTGAAATTCAATTCTAATCTATTCTATGAGAGG 454322 36 100.0 41 .................................... TTTAAAGAAAATTTGGGCTATGGCTAAAGCTGGACGTAAAA 454399 36 100.0 39 .................................... AGAAACCTAAGGAGGACAAATAATGCAAAGTGAAAATTT 454474 36 100.0 36 .................................... TCAAGTAATTCACGAATATCTAAAATATCTTGTGGC 454546 36 100.0 41 .................................... TTAAGTTATTACTTAAATGTACCTTATAAGGTACAGATCTT 454623 36 100.0 42 .................................... GGAAAACGCCACGATAACGTTTTGAGGGATATTGAAAATTTA 454701 36 100.0 38 .................................... TTGACCTATTCTTTGATGTAACTGATTGCTTAGAAGAT 454775 36 100.0 39 .................................... AATTGAGCGTATAACCTTCTTATGTTCTTTCCCAAATGC 454850 36 100.0 39 .................................... AGAAAGTAGAGGAGAAATAAAATGAGTTTTGGATTTACA 454925 36 100.0 40 .................................... AATGAATTTGAACGGAGAATTAGTAGATTTCTTTAAAGTT 455001 36 100.0 39 .................................... ACCTTATCCAACGCAAGAGCAGCTTAAGCAATCCTTAGT 455076 36 100.0 41 .................................... GGTATCGTACTTGAGGTAAAGGGTATCAAGTGGACAAAACG 455153 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 28 36 99.2 39 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : TATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTATTTCTTCCAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGCTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACCTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 48327-47379 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUV01000006.1 Ligilactobacillus salivarius strain FSDLZ17M12 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 48326 36 100.0 30 .................................... TTGTTGCAGGAAGTACAGTGTCTTTCTTCA 48260 36 100.0 30 .................................... AGTCCTTACGTTTAATGAAACAAGCTGAGA 48194 36 100.0 30 .................................... ACTATTTTTAGGTGTATTTCAATACCTTTT 48128 36 100.0 30 .................................... TTGGTTCAGTACAAGCACTGCCGCTTACAA 48062 36 100.0 30 .................................... TCTCAATAAATCTTTAATGCGAATATTCAT 47996 36 100.0 30 .................................... AAATGCGTTTGAAGAAGAGCAAAACCGCCA 47930 36 100.0 30 .................................... TTTTAACCCTAGGCGGTATCTTAAGCATAA 47864 36 100.0 30 .................................... ATTGATTTAGCAGTGAATTTCTGATCAGAA 47798 36 100.0 30 .................................... CTAGGGATTATGCTAGGGAGCAAATAACTT 47732 36 100.0 30 .................................... TTGATAAGCGAACCATTTATCGCCTTTCTT 47666 36 100.0 30 .................................... CATTTTTTGCGAAAAAAGTAACAATTATTG 47600 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 47480 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 47414 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 14 36 97.6 34 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCAAATTAGCAAAAAATATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : TAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGTTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCAG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //