Array 1 99-436 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000023.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 99 30 96.7 29 .............................C CGCCGTGGGTGGCGGGGGTGGGCGGCTGG 158 30 93.3 31 ............................AA GCGGGGGCGCTACTGGCGCGTCCGGTACCGG 219 30 100.0 32 .............................. GCTCGCGAGTACGCCTTCGAGCTCCGCATTCC 281 30 96.7 31 .............................A TCGCGCGGGCGTTGGGGGCGTGGCCGTGGGT 342 30 96.7 35 ............................G. CCCACCGGGGCGCTAAGGCCCGTCGGCGCGCGAAC 407 30 90.0 0 ........................A...TG | ========== ====== ====== ====== ============================== =================================== ================== 6 30 95.6 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : TCCAGAGGGTGGTTCGTGGTTCGGTGGGTGTTTTGCCGGTTTCTTAAGAAGTGGTCGTGAACGGCTTCGGAGCTCGGTAACGTTGCAGGTCAGTAAGAG # Right flank : GTCTCGGACGTTCTAACGGGCCAGGTGTCTAAGTGCTCCCTGCTCCCCGCACCGGCCTGGTTCAGAGGGTTTCCAGGATCTTCCACTCGGTGTCGGCGCTGATGGACTGGCTGGCGCGGGCGGTGTGGACGAACAGCAGGTGGATCTCGGCGGTGGAGTGGCAGGTGACCTTCACGCCGTAGGGCTGGTCGGAGGAGCCGAGGTCCGGGGTGGTGGAGTAGCGGTCGACCCGGGCGAGCTCCCGGTGCCCGCTGTTGGCGAGGGCCGCGGCGATCCACGCCTCGACGTCGGCGGTGCGCGTCCCGCCGCCCGCGAGCGTCATCGGCTCCATCGGGGCGGGCGGTTCGCCTTCGGCGATCGGCTCCTCGGGCTTCTGGTCGGCGCCGTCCGACGGGGAGCGCCGGATCGCCTGCACGTAGACCTGGCCGCCGCCGGGCAGCTCGACCACCTCGCCGAACGGCCGTTTGGCGTAGCCGGCCTCGGCGAACGTGCGGACGGAT # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21-232 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000034.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21 29 96.6 32 ..............T.............. TGGTGGCGGAACCGGTGCGGGTGGACTCCGTC 82 29 100.0 32 ............................. CCCCAGCCAGCCCGGTCGCGGTCGGTTCCGCT 143 29 96.6 32 ................T............ GTATCTCGGCACGTCGGGGTACTGCTCTGCTG 204 29 82.8 0 .......................CCGGG. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GGCTGACCACGCCGGGATTCG # Right flank : GGTTAATCAGCTCGCGGTCGGGGAGTGGTCTTTCGGCTCGGGCGGTGAATCAGATCATCGTCGCCAGGCTGACGTGGGATGTAGTGGAAGCCGTCCTTGGTTTCGGGGTCGTAGTGGATGACCGCGTCCTCCTCCTCCAGGAACGCCTTCCAGTTCTCCAGGCGCTTAGCCTCGTCCTTCGAGATTTTCGCGCCGGCACGCCGTCGCGCCTCCACCCGGAGCATCGCCACGGGGTAGGACCAGCGGTGCTCAGGAAGGACGTGCCACGGAATCAGGTCATCGTCTCGGACGATGCGCCGTTCCAGGCCTCGACGGCGCCGGAAATTCCCCCAGAGTGAGGGGACGGTCTCAATGTTGTACTTTCGTTTGTACTCCGCCACCATCCAGGCGTAAGTACGCCCTTCTTCGAACCATCTGATGACTTCCTGCTCGTCGACGATCTTCTTAGCCCCCAATGGACTCACCTTCTGGTTGATTTCCGCTACTGTTTCGCTTCACTA # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 135923-136221 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000008.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 135923 30 100.0 35 .............................. ATGGCCAGGCCGGGCGCGATCTGCGCCAGCACCGG 135988 30 100.0 37 .............................. CCGGTCAGCTCACAGATGGCGTCAATGGGGACCCCGA 136055 30 100.0 34 .............................. ATGCACAGACACCGGTAGTCGACCGCCCGTTCGA 136121 30 100.0 41 .............................. ATCATCATCATCATCGTCATCGTCTCCGGTAGAGTTCGCGG 136192 30 73.3 0 ......................NNNNNNNN | ========== ====== ====== ====== ============================== ========================================= ================== 5 30 94.7 37 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : CCGTCCACCACCGTTCCCTCAAACGCAAGGTCAGCTACGAGGAACTCATCCACCTCGAAGCCCTCAAGGTCGTCCGGCTCTGTCTTGAGGAGACCCCCTACAAACCCTTCAAACCCTGGTGGTGACCATGTTCGTTGTCGTCGTCTATGACACGCTCGCGGAGCGCAACCCCGCAATCCTGAAAACGTGCCGTCGTTACCTTCACTGGGTCCAACGCAGTGTCTTTCAGGGGGAGTTGTCCGCGGCCCAGTACCGTTCCTTCACCGAGGCGATCAAACACCTGATCGACCCGTCCTACGACAGCGTTCTCATCTACCGGATGCAGGGACCACACATGGTGCGGACGGAAACGATCGGGCAGAAGTTCACCAGCGACAGCCCGGTACTATGACGGGCTCCTCACCCGTTTTGACCTGCGGTGTTGCACTACCGGCGGACCTCTGCAAAACAGCCTCCTTCCCGCGTCGGAAAGAGGCGCGTGACCTGCGGTTTTACTCTCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCTGATCATCCTTGGAGGGATCGCAACCCTCGTTCTTCACGGCCTCTGACGGCGGCGGCGGGGTCGCTGATCATCCTTGGAGGGATCGCAACATGGCGAGGTGAACTGGTCCGGTGGTGTCGGCGGATCGCTGATCTTCCCTGGAGAGG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 4891-4496 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000025.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4890 30 100.0 31 .............................. CGGCTCTTGCGGTCGCTGCCCGCCCATCCGC 4829 30 100.0 31 .............................. GGCTCTTGCGGTCGCTGCCCGCCCATCCGCG 4767 30 100.0 5 .............................. TCCGC Deletion [4733] 4768 30 100.0 30 .............................. GAGGGAGTGCGCGACCCGGAGCGCGAGCTG 4708 30 96.7 31 ............................T. CGGCTACGACTACCTCGGCCGCGCCCCCGAC 4647 30 100.0 31 .............................. TCGCCCGCGCCATCCTCGACGCGCTGTCGAT 4586 30 100.0 31 .............................. TTCTGGGAGATGCTGCGGACCCGTATGTCCG 4525 30 93.3 0 ..........................G..G | ========== ====== ====== ====== ============================== =============================== ================== 8 30 98.8 27 GTGAGCCCCGCGCACGCGGGGATGGACCGC # Left flank : CATTCGCGGCGACTGTCGCATTTCTGCGTTTTTTGGAGGCGAATGCGTATTTCGCCCCTTTCTCAAGAAGTGGTCGAAACGGAGGCCGGCCGCTGGTAACGTCCCAGGTCAGCAAGAGTGCTCCCCGCGCACGCGGGGATGGTCCCCACCGCGAAAACGGGACCATTTTCACGCGCCGGTGCTCCCCGCGCACGCGGGGATGGTCCCACGACGTCGTACTCGGTGGAGTTGCCGGGGTTGGTGCTCCCCGCGCACGCGGGGATAAACCCCCCGCCTCGGTTGGGCTGATCAACCTGGGGCCGTGTTCCCTGCACAAGCGGGGCTGGCTCATCTGCGGGCTCCTCGTGTATCTGTGGGGTGGTTTTCCGGTTCGCGGTTCTAGGAGGGGGAGGTTGTCCGGCAGAATGGTGGTCATCGGTCTCGACTTGTCGGTCGTTCCGGTGGGCTCCGGAGGTTTATAAAGCGGAGATAACGGCCCGCAAAGCCGCAGGTCATCTTCT # Right flank : TCCGGTCGAGGGTTTCCAGTCAGGGTCGTGGTGAGCCCCGCGCACTCGGATGGGTTCACCACGGTCGCTGCGGATCGGCCTGCGCCGGTCCACGGCGGGCGCCCGGCCGCGCGGTCAGTGGTCGGGATGGTCGGTGATCGTGCTGGTCGTCGTGCGGGCGTGTCCCGGCCCGGGGAACCGGCCCCTCGGCGGACCGCCCGAGCCCTTCGCCCGCCAGCTCTCTCCGAGAGCGGTCAGCCGGAAAGAAGGTAGGAACATGGGGCCCGCTGGGGCGGGAAGCGCTTCGCGCCGCCGGCCCGCATCCGCCCGTAGCCGACGAGGAGAGGACGAGCATGGACGGGGAACACCTGTGGAGGACGGCCCGGGAACGCGCCGAGAGCCTGCCCGCCACCGCCCTGGAGTACCCCTTCGGCCCCGACTGGGAGGTCTTCAAGGTCCAGGGCAGGGTGTTCATGCTGATGACCGAGGTGCCCGGCAAACCGGTCGTGATCCTCAAGTCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 15209-14984 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000025.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 15208 30 100.0 35 .............................. CTGGCTGGTCCGGATCAGTCCTTCCACCTGAAGCT 15143 30 100.0 34 .............................. TCGGTCTCCCCGGTAGGGGTCCGCCCGGATTTGG 15079 30 100.0 36 .............................. CCGCGCTGGGCCAGGTCCACGATCGCGGCGTAGATC 15013 30 86.7 0 .......C........G.......T..G.. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 96.7 35 GTCGCTGATCATCCCTAGAGGGATCGCAAC # Left flank : AGATAACGGCCCGCAAAGCCGCAGGTCATTTTCTGTAAGCCCCGCGCACGCGGGGATGGACCGGTTCCCGGTCCACCGGGTCCCGGTCCACCGGTGTAAGCCCCGCGCACGCGGGGATGGACCGGCGTCGGCGCGCGCGAAGAGGCGCAGCGCAGAGTAAGCCCCGCGCACGCGGGGATGGACCGGCCAGCGCGATGTTCTCGGCGATCTGGGGCAGGTAAGCCCCGCGCAGGCGGGGATGGACCTCTCTACCTCCAGCTCACCTCCCGTGACACCGCGTAAGTTCCGCGCACGTGGGGATGGTTCTTCAACTCTCTTCGAGAGGATGTTGGTGGAGACTTGTTTGCCCGCCCATGACCGGAAAGACTTTCGAGAAGTCTCTCCTGGAGGGAGCTCATCGCGGCCTTTCTACCTGCGCTGATGCACTACCGGCGGATCGCTGCAAAAATGAGCCTTCGAGAGACCAGCAAGACGGCTCTGGCCTGCGACTTTACTCTCGG # Right flank : GAACAATCTGGTCGTCTGGTCGCGAGTCGGTGCAGGTGAACCTCGCGCGGGGATGGCCTCCGCTCGGTGGGATGTTCCCTTGCCTCAGGGGCGCGGGACCGGCTGTCGGCCTTCCCATTCGTGAGGGCGCCGTCCGTGTGCGATCCCGCCGTACCCGTGCCCGTCCTGTGCCTTCTGCTGTCTTCTGCGCCCATGCGCGCCTGCCCTGCCGGTCGCGTGGACCGGGTGGCGGCTGGCCTGGCGACCCGGCCCGGGCCAACAGCGCTTCAGTGCTGGAGGAGCCCGCCGACCGGGACGGGCGGGACGTGGCCGGTGGGCGGAAGGGTCCGCGCCAGGGCGATGCCGACGTCGACCAGCGACGACCGGCGCAGGCCGGCGACGTCGGGGATCAAGGTCCACACCGACTCGGCGGTCTCGCCGTTCGGTTCGGGGCGGAGCCGGCCGCCGGTGACGCGGACCAGGTAGAAGACCCCGACGTTGTGGTGCTCGACGCCCGCGCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 15675-15401 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000025.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15674 30 100.0 31 .............................. TTCCCGGTCCACCGGGTCCCGGTCCACCGGT 15613 30 100.0 31 .............................. CGTCGGCGCGCGCGAAGAGGCGCAGCGCAGA 15552 30 100.0 31 .............................. CCAGCGCGATGTTCTCGGCGATCTGGGGCAG 15491 30 90.0 31 ..............G.............TC TCTACCTCCAGCTCACCTCCCGTGACACCGC 15430 30 76.7 0 .....TT.........T........TT.TT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 93.3 31 GTAAGCCCCGCGCACGCGGGGATGGACCGG # Left flank : TGCCGCGCGCGAAGCCCGCGAGGAGACCGGTGTCCTCATCGATCCCGGCACGCTCACGCTCGCCGCTGTCGTGCACCACCGGCAGAGCCCCGGCCACGCGCGCGTCGGCATGTTCCTCCTCGCCGAAACCTGGACGGGGGAACCCGTGAACACCGAGCCCCACAAGTGCGGGAAACTCCAATGGGCCGACCCGCACCTGTTGCCCTCCAACACCATCGACTATCCCGCCGTGGGCATCCGCGCCTGGCTGGAACAGCGCCCTCTCGCCCTGCACGGGTGGGGCAGCACGGAAACGGTGAGGTGAGAGACAGACCGGGCCGGGCCGGCCTTCCGACAGTCACGGCCCGACCAGTGTCTGTACCCGGTCACTGGGGCGGGCGGTCTTGACTCGTTGACGAGATCCCGTGGAACATGAACTCGCCCTTCTCGAAGGGCGCTTCTCGGGCTTCCAAGATTTATAAAGCGGAGATAACGGCCCGCAAAGCCGCAGGTCATTTTCT # Right flank : CAACTCTCTTCGAGAGGATGTTGGTGGAGACTTGTTTGCCCGCCCATGACCGGAAAGACTTTCGAGAAGTCTCTCCTGGAGGGAGCTCATCGCGGCCTTTCTACCTGCGCTGATGCACTACCGGCGGATCGCTGCAAAAATGAGCCTTCGAGAGACCAGCAAGACGGCTCTGGCCTGCGACTTTACTCTCGGGTCGCTGATCATCCCTAGAGGGATCGCAACCTGGCTGGTCCGGATCAGTCCTTCCACCTGAAGCTGTCGCTGATCATCCCTAGAGGGATCGCAACTCGGTCTCCCCGGTAGGGGTCCGCCCGGATTTGGGTCGCTGATCATCCCTAGAGGGATCGCAACCCGCGCTGGGCCAGGTCCACGATCGCGGCGTAGATCGTCGCTGCTCATCCCTGGAGGGATTGCGACGAACAATCTGGTCGTCTGGTCGCGAGTCGGTGCAGGTGAACCTCGCGCGGGGATGGCCTCCGCTCGGTGGGATGTTCCCTTGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 3938-4264 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000016.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3938 37 94.6 34 ..........C........G................. CACCAGCAGGGCCGCGCGCGACCCCGGAGAGGTC 4009 37 100.0 35 ..................................... AGCCTCACCACGGGGGAGCGGTCGCCTGCGATCAT 4081 37 100.0 37 ..................................... CGCCGAGGCGTCGGGTACCCCGATGGCGGTGGTCGCC 4155 37 91.9 35 .......T..C........G................. TACAACTGGTACTAGGGCCACCTGAGCGGGTGGAC C [4183] 4228 37 78.4 0 .A........CT...T...G...T......A.....T | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 93.0 36 GTGGCAGCCGTCCTCCGGGACGGCTGAGGATCGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCGGGCGCCTCGCGAACGCGGGCGTGAGTTGCCTTATCCTCGGAAAGCGGGTCCGAGGAGTCATTTGGAGGTCGTCCTCGGGCCCCGGAGAGGGTCCTAGAAGGGGTTAAATAAGGCCCCCTTCTAGGACCTATTCGCATTTCAGGGGAAAATCCTGAGCAGCGAGAGGACGGTCCTGGCTAGAGCTGACGCCAGCCTGACCAGCTTGAGTGTCCGAAGTAGGTAACTCATGAAATTTCCCTCTCTGTCCGAATCGTGCCCGCGGCGTCTGCGGGCCTTGCGGTGAGGAGCTTAGATCACCGCAAGGCCCTGTTGGGGGCAACGGGGTAATTCATTGACCCGCTACGCGCTAGAGCTTCCTAGAAGGAGGCGGCCTGTTAAGGTCGTTGGTGTGGGTGAGGCCCAAGGCGGTGCCGGCCTGTTCTGGGTTCATGCGGCGCCGAGGATCGTAAATAGGACGCTCTGCGTGTAGCGGGACAAAATGGGAAACTCTGGCCCGG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGTCCTCCGGGACGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.70,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 12585-13570 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000016.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 12585 37 100.0 34 ..................................... AGCGCGGCGAGGCGCCGCTCGCGTGCCACCTGGG 12656 37 100.0 36 ..................................... TGGCTGATCCGTAAGAAGGTCCACTGGGTCGTCTCC 12729 37 100.0 36 ..................................... CCGCAGAACGGCCACCTGTCCAGGGCGGGGGAGGAA 12802 37 100.0 36 ..................................... ATGACAGCTCCTTAAGAAGAAGGGAGCCCGCCCGAG 12875 37 100.0 36 ..................................... CTTCCATCCCGCGGCGGTGTCGGCAGCGCGCCAGCA 12948 37 100.0 37 ..................................... CCCCGCTCCTCCCTGATGTGGATCGGGTCCCGGGAGA 13022 37 100.0 36 ..................................... TGCTTCCGCTGAGGTGGTGTTGGCGGTGGGTGGGGG 13095 37 100.0 37 ..................................... CCCCGCTCCTCCCTGATGTGGATCGGGTCCCGGGAGA 13169 37 100.0 36 ..................................... TGCTTCCGCTGAGGTGGTGTTGGCGGTGGGTGGGGG 13242 37 100.0 36 ..................................... CTCAAGGGGAAGGTCCTCGGCCTCGGCCTCGGGGGC 13315 37 100.0 35 ..................................... CCAGTCTGATCTCCGGGCCACCGTGTTCCAGGGGT 13387 37 100.0 35 ..................................... ATGGCCACGATCGGGAGGCCGTCTCGGACCGCGTC 13459 37 78.4 35 .......T..C........GG.....G......TG.G CACCGAACTTCTAATCCGGTGGTCGTGGGTTCGAG G,G [13483,13485] 13533 37 73.0 0 ..........C....T.AAGT.....G..GC...G.. | C [13543] ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 96.5 36 GTGGCAGCCGTCCTCCGGGACGGCTGAGGATCGCAAC # Left flank : CTGCCTTCGGTGCAGGCCCGTCTGATGGCCCGCCACCTGCGCAAGGACCTGCCCGGATACCTGCCCTGGACGGTGTGAATGGAACTGCTGGTCACCTACGACGTCTCCACCACCACCCCGGAGGGCGCCCAGCGGCTGCGGCGGGTGGCCAAACTGTGCGAGGGCTATGGGCTGCGGGTGCAGAAGTCGGTGTTCGAGGTGGTGTGCAGCGACGCGGATCTGGTGCGCTTGAACGACGCGCTGCACCGGATCATCGATGACACCGAGGACAGCATCCGCATCTACCGGATGAACCGAGGCTCGTTCAAGGCGGTAGAGGTATTGGGGGCGGCCCGCCGGCTGCCGCACGACGAGGCGCTGGTGCTGTAGTTGGGAACCTGGAGTGGACATGGATTCCCGGGGAGGTTCCCAAGCATGTTTGGTGGGTTTCCGGGTGTCGTGTCTGTTTCGGATCGGGTGCTCGACGCTGTTCAGCGGAACGTTTTCGCTGCTCGGGCGCC # Right flank : CGACCGCGTACAGCCTCGTCCCGGAGGCGTCTGGGAAAGGGGCGGCGCCCTGGGGGTGGATCCCGGGCGCCCGCGCGTCCGCCCGGGGTGAGGGGCGTGGTGGCTGCGGGGCGTCTCCGGAGCGGCACAGGGACACGCGGGGGACGAACACGGGGCCGGTGGGGACGAAACGGGTGTCGGGAACGGGGAACCCCAGGCCGGGGCCGCGCTGGAGTGAGGTTGACCTGGGGTTTCGGGGCGCACCCGGCAGGATTCGAACCTGCGACCATCGGATTAGAAGTCCGGTGCTCTATCCACTGAGCTACGGGTGCCTGATTCAATTGTGGACCGTCGGCGGGGGGCGTCGTGGACCTGGGTCCGGCGGTGTTCCCCGCTGCTTGGTGATGCTACGGCCGACAGGGGAGAGCCGGTCGGCTCTCTCATGTCCTCAAGGGGTCATCTTAGGGTATTCGGCAGATGTCACCCATGGCCGGGCGAAATAGTAACAACTACGGCCATTC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGTCCTCCGGGACGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.70,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 197433-197058 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000005.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 197432 29 93.1 32 .........................CT.. GCTGCGTGAGATGGGTTTCGCGGCGGCGCTGG 197371 29 100.0 73 ............................. GCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG 197269 29 100.0 32 ............................. TGCCGCTGACGTGCGCCATGTCCGGATCGTGC 197208 29 100.0 32 ............................. GCGACCATCACCCAGCAGGCCGAGCTGGCTGC 197147 29 96.6 32 .........................C... TCGGCGGACCACCACTCCCACACGCGCTGGCG 197086 29 93.1 0 ......................C..C... | ========== ====== ====== ====== ============================= ========================================================================= ================== 6 29 97.1 40 CTGCTCCCCGCGCACGCGGGGATGGACCC # Left flank : CACCGGCCATGCTCCTGCCATCTCCCGTCCGGTGGGAAGGGAGGTGGGTGAGGGTGGCTCCGCCGCGGCGCGCTGATCTGGATATCGGAGTGTTGCGAGAGATGTATGTGGTCCAGGGATTGTCGTTGGCCGAGGTCGGGATGCGGGTGGGGGCGGCGGGCAGCGTGGTGGCGCGTCATCTACGTCGTGCGGGTATCGCGGTTCGTCCACCCGGCGGACGGTTGGACCTGCCGGTGGAGGAGATCGCGGCGCGGTTTCGGGCGGGGGAGTCTCAGCGTTCGCTTGCCCGCGCCTACGGGGTCGCGCTCGACACGATCAAGGCTCGCCTGAAGTCCCATGCGGCCGGCCACGCCGATCAGTCGGACAAGCCGGTGACGGGAAGAGGGTGATTTCCCCTGGGTATTGAATGGGTGTTTGGTGGCCTATCGCGCGCTTCGCCCTTTTCTTAAGAAGTGGTCGAAACCGAGGGGGTCAGCTGGTAACGTCCCAGGTCAATAAGA # Right flank : TCTCCGTGCCCGCCCGGGGTGGCGAGCCGGAGCGGTCGGGGGCCAGTTCAGGGTGGGCGAAGAAGGTGGGGCCTCTCCCGGTGTTCCGGGAGAGGCCCCACGTGTGCGTCTGGGCGGCGGGTCAGGCCGGCTGGGGGGAGAGGGCGTCGTCCAGGACCATCTCGATGTAGTCGAGGGCGGCGCGGCGGCGGGCCAGCGCGCTCTGGTAGAGCGACGGGAGCCGGGAGCCGCGGCGGATGCGCAGGCACTCGTTGACGATGCGGTCCCACCGCTCGGGGAAGGCGTGCAGCGCGTAACGCCCCGCGCCGGACTTCGAGGTGATCTCGCCCGTGCGCAACGTGAAGTGCAGCCGGCTGACGCTCAGCACGCTCCACGACGGCGCCAGCGACCCCAGCGCGGCCAGGCCGCGCGGCGTGACCAGCCGGCCGGCCTTGGCCCGCCAGCGGCGCCAGTGCTCGTCGAGGTTGCCCAGCGACCAGTCGCGCAGGCTGTCGCGCTCG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.62, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 200507-200228 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000005.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200506 29 100.0 32 ............................. GTCGGCACCCGCAACACCAGCCTGAACGCGGC 200445 29 100.0 32 ............................. GAATCGGGCGCGTCGGACATGGTCTCGGGGGA 200384 29 100.0 33 ............................. AGATCGCGCCCTACGTCGACAACATCATCCTCA 200322 29 96.6 32 ............T................ ACCGCGTAGAGGTCGTCCTGGTTGTTCATGGG 200261 29 93.1 0 ........T................G... | CCTG,G [200235,200240] ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.9 32 GTAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GAGGTTCCCCGCTTCGCCTTCCTGGAGCTCGCCGAGGAGGACTCCCTCCGCGCAGCCGACCGCGCTATCCAGTTCGGCATCGGGCTGGTGCAGGAGGTCGAGGGCGCCATCGGCGCGGACCCGCTGCGCGGACTCGCCGAGGAGTACGCCGACTCGCGTGGACCGTTCGAGGAGCTGGAGGGCGACCTCCTCGAAGAGAGCCTGAGGATCGTGCGCGAGGAGCCGGAGGCGGAGGCCCGGCGCCGTCTGCGTGAACGCTCCGCCGCCCACGGGCGGCGCGTGCGGGAGGTCCTGCTGCCCGTCCTCGCCTCCTCCAGCGGCTGGTCGCCGGACGACATCGAGGCGGCGCGGGGCTAGCCGCCCGAGGGACGGCACGAGCGGGTCGCTGACGTAGGTGAGGGCTCGTGCGCGTCCCGGCAGACCCTCAAGCCTGATAACCGGCAGACCCTCAAGCTTTATAAAGCGGAGATAACGGCCCGCGAAGCCGCAGGTCATCTTCT # Right flank : GCTGGAGTACTGAGGCCCGAGAGTGCGTCCCTGACGAGAGGGCACCGGCGTGGCGTCGGAAGCTAAGAACAGCCAGATGCGCGTGATCTCTCGGGTGCCTCATGTTGGCGATATGCTCGCCTAAGCAGCCCTTCGGGGCGGCTTCAGGTGTGCGTGACCCCCTCGTCGGTAGTCGGCGAGGGGGTCACGTGCTTTTCTGCCTACAGTCGGTCGGTCTTCACGGCGTCGAGGAATGCGGCCATTTCGGCGGCGGGGAACGTGAGGTGGCCGTGGTCGGGGTTCTGGGAGTCGCGGACGGCTTGGGCGCCGGGCAGGTCGGCGACCTCGACGCAGTTCTGAGACTGGGTGCTGTAGCTGGACTTGCGGAAGCGGGCCTCAGGTGTGTTCATGGTGCTCCTCGTATTCGATGCCCTCTAGGAAGTGGGCACTCCGAACTGTACTGAGAGCGGCTCCCTGTACGTCGCTGAAGGTGCCAACGTAGGCGGCCACAGCCTCGGGGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 204368-203849 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000005.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 204367 30 96.7 31 .............................G GTGGGGCTGGTCTTGCTCATGTCCGCGTCCT 204306 30 96.7 31 .............................A GCACCTGATGGCCCGCCCGCGCGGCCGCCCG 204245 30 100.0 31 .............................. GCGCCGCGATCGCGGCGGTGCTCGCGACCGA 204184 30 96.7 32 .............................T TTGGCGAGTGAAGCGCCCGGTGCGGGACTTCA 204122 30 100.0 31 .............................. GGCGGTACCACAGGCCGACGTACTGGCTCTT 204061 30 96.7 31 .............................A ACGCCCCCGCGAACGCGGTCCGCTACGGCGA 204000 30 96.7 31 .............................G CGCTTCTGGTCGGCTACGGCGCGTTGGCGCA 203939 30 100.0 31 .............................. CGGGTCCGCTACGCCGCGATCCGCGCGGCGT 203878 30 83.3 0 .........................GGGTA | ========== ====== ====== ====== ============================== ================================ ================== 9 30 96.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : AGACGGGCCCGGTGCCGGGGGCGTTCGGATCGATCAGCGTGACCGAGGACAGGCCGGCGCCCGCCTCCCGAACCAACTGCACGAACGCGCTGATCCCGGCCACGCCGGCCCCGACGATGGCGATGTCCCGCATGCTTCCGATGTGTCTCCTCCGCGGTGAATCGCGTACTTATGGTGCATCCTGCCGCAGAGCGGAACGGGGAGCCGGGGAAACGGGAAGAGCGGCCGGGGGCGGCCACCGCCTGTGAAGAGCGGCCGGGGCGGCCACTACCTGTGAGACGTTTCGCGGGTCCCGGCCTCCTCGGCGGGCCGGCGCCACGTGACGCCGTGTGCCACTTCGGTGTGAGAGGAGCCATGGGCTTGGTCCGTCCCATCCCGGCGCCTCCGACCGGGAGAAGGGCGTTTCTGTGCCGTTTTGAGCCTTTTGCTGCTCCGTGCCGCTTTCTCAAGAAGTGGTCGAAAACGCGGCTCCCCACTGGTAACGTCCCAGGTCAACAAGA # Right flank : TGTCTGCCCTGGCAAGGACGGATCTCATGGCGCTGATCGCGGTCAGGGCCGCCAGTGGACGCTCGGGGCTTAGGGGGCACGGGGAGAGCCCGAGGCGCGCGCAACCGTCCCAATGACGCCGACCACGCCACAGACCCACACGACCGGCAAGGAATCGGGCGATACCCGGCAGAACGCCTTAATGGGGCCTCGGCGCCTTCGTTTGGCCGAAAACGGCCACCCTCCGGCTTTCTGTGACGTATTCCATCTATGCTAGGCGTCCTTCCATGCCCGACCCGCAGGTTGGGCGGTGCCCCCCGTCCAGAAGAGATCGCCCGTGACCCGACTTCCCGTGCCCGTGCGCTGGGTCCGTGCCCTGCTGTACGTCTCTGGTGGGCTGACCCTCCTGCTCGCCGTGTCCATGCTGATCCTCACCGGGATCTCCGCCTACGAACTCGGCTACAACCTCATGGCCTCCCTGCCCGGCATCCTCCAGATCCTGTTGGCGGTGTTCGTCCGCC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 210893-210435 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000005.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210892 29 100.0 32 ............................. CTTATCGGAGGCTTAGAACAACGAGCGGTACA 210831 29 100.0 32 ............................. AACCCTGTAGCCAATATTATGAAGCTAGCTGA 210770 29 100.0 33 ............................. TCGGCGCGCTTGAGGCCGGTCAGCTCGCCGTCG 210708 29 100.0 32 ............................. GGACAGTCCGGCTGGGGGCGGATGGCGGGCCG 210647 29 100.0 32 ............................. CGTTGCGTGCCCTGCTGGACCGGGTGTGGTCG 210586 29 96.6 32 .................A........... GGGCAGGACGCGGTGAAGAGATGTCGGCAGGG 210525 29 89.7 33 ..............T..A.......A... GCGGTGGCGACCACGTGGGCGCGGCCTCGGCAA 210463 29 86.2 0 .......................C.T.GG | ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.6 32 ATGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : AGTCGAGGTGGAGTCGGGATACAACCACGCCGTCGACGACGGGGTGATCTGGTGACGGTCATCGTCCTCACCGACTGCCCGCAGGGGTTGCGCGGGTTCCTCACCCGTTGGCTGATGGAGATCTCACCGGGGGTCTTCATCGGCCGCCCCTCCGCCCGGATCCGCGACGCGCTGTGGGACGAGGTGCGCGGGTACACGGGCAAGGGCAGGGCGCTCCTGGTCCACAGCACCGACAACGAGCAGGGGTTCACCTTCCGGACCCACGACCACAAGTGGCACCCGGTGGATCACGAAGGGCTCACCCTCATCCACCGCCCCCGCGACAAGGCGGAGGGGACGACGGCGGAGCCACAGCTCAAGAAGAAGGGGTGGAGCAAGGCCTACCAACGCCGCCGCTTCGGGAACCGGTGAACGGATTGGGTGTTATGGGGTTTTCGTCCGATTCTCGGAAAGTGGTTGTAACGAGGGTCCGCCCGGGATAAAGCCGCAGGTCACGAAGT # Right flank : GTGTGTTCCGGCGGGCAGGGGCCGGGGTGGGGCGGTCCTTGTGGAGTGCCGGTTCCGGCCTCAGGTCAGGGGTGGGACAGCCGGTCGATCCGGTGGATCTCGGAGAGCACGGCCTCCGCGAGGGGGTGGACCCGTGCCCTCAGGTCGTCGCTCCAGCGTTCCTCGGAGTAGGGGGAGCCGAGGTAGAGCCCCTTCACGTGCTCCAGGACGGGCCGGTGTTCCCCGGGGAGCCGGTCCATGGCCCAGTCGGCCGCCGCGTCCTTCGGCCTGATCACGCCGGTGGCGAGGGTGCTCCAGGTGCGCACCAGGGTGAGCAGGACGTTGCGGGTGTCGTCGTCCAGTTCGGCGAGCAGGCCGGGGAGCCCGTTCACGCTCGCGCGGATGAGGTCCTCGCGCGGTACGGGGTCGAGGACCTGGGCCGGAGGTGGGCCCGAGAGAGGGTGGTCGCCGGCGAGCAGCATCGTGATCACGATGGCGAGGTCCGGCATCGGCCCGGGCCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2798-3313 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000009.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2798 29 100.0 32 ............................. GCAGTACTCAGCGACCACACCGCAGGTACGGC 2859 29 100.0 32 ............................. CCAGTGGGGGATACCGCGCTACGCGCGGCGAC 2920 29 100.0 32 ............................. AGCCTGCGCGTAGACCACGGCGGCGCACAGTG 2981 29 100.0 32 ............................. AGGTTGGAGTTGCGGCAAAACGACCTGCTCGT 3042 29 100.0 32 ............................. TCCGGCGCGACTATCACACGGCTTTTCGACGT 3103 29 100.0 32 ............................. GAGCTGGCCGCCGCCGAGGCGGAGCAGGAGGA 3164 29 100.0 32 ............................. GAACAGCTCGGCATCCCCGAGCGCGGCCTGTG 3225 29 96.6 32 .........................G... GTCGGCAGTAGCCGGTCCTTCTCGGGGAAGGG 3286 28 79.3 0 ..G..-........A..C....C.A.... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 GTAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CGACCACACCAGGTTCGGCCTCACTGTCACCCCGGACCGGCAAATCGTGTGGCTGGACGACCCGGCGCACCCGGTTGCCTAGCACGGGACGGGACATCCCCTTCTGTATGGTGACCCGGCCCGCTCGCCCTTATGGCCCCGCAACCTGCCCGGCGCTGGAAACCACGACGGGGTGGGGGATGAGAAGTCCAGGCGCCCACCAGCGGGACCGCTATCGAGAGTCGTCGGAGCTCGTAATCCAGATAGCGGCCCTGGATCAGGGCCGCAGCATCGATCACCGAGGGCCGCGTGCCGGGGTGCGTAGGAGCGGATCCGGGAGTGGCCGGACCGCTGCGCGGCGGGACAGACGGGGCGTGCGGAAGGGCGCGTGGAACGTTCGAGGGGAACGTGTCATGTGAGAGGGCGGTTCTCCGGCAGAATGGCTGTCGCCGCCCACTCCGGTGGGCTTCCGGATTTGGTAAAGCGGAGATAACGGCCCGCAAAGCCGCAGGTCATCTTCT # Right flank : GGGCTAGTCCCCGAGTCCGGCCTTCTGGGCGTACAGGGCGGCCTCCATCCGCGTGTGCAGCTGGAGCTTGTCGAGGATGTTGCGGACGTGGTTCTTGACGGTGTTCTCGGAGATGTAGAGGCGCTGGCCGATGTCCCGGTTCTTCAGCCCGCGCGCCACCAGGCGCAGGACCTCCGTCTCGCGCTCGGTCAACCTCGGCGCGGACTCCGCCGGGGAGCGTGAGGAGCCCTTCTTCGCCAGCGCGGCGAACTCCCCGATCAGCTTCGCCGCCATCGACGGGTTGATGAACGACTGGCCGTCGGAGACCGCGCGCACCGCCGCCGGCACCTCGTCGACCGGGATCTCCTTCAACAGGTAACCGGTGGCCCCCGCCTTGATCGCCTCGAACAGGTCCTCCTCCTCGTCGCTGACCGTCAGCATGAGGATCTTCGCCATCGGGGCGATCGCCTTCACCCCGGCGCAGGCGTCGATCCCGCTGCTGCGCGGCATGCGGATGTCCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 14366-14578 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000009.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14366 29 100.0 33 ............................. GCGTTGAGGTGCACACCTCCCCCTCCCCCATCC 14428 29 100.0 32 ............................. CGACGTACATCGGACCGCCACACACGTCGCAC 14489 29 100.0 32 ............................. CGGCCGTCAGCGGCGACGTGTTCGAGTCCGCG 14550 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 99.2 33 GTAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GACACCCTGTTCCTGCTCGACGCCCACGACAACGTGCTTTTCCGGGTGTACGGCCTCAACTACGCGACCGAGGACATCAACCGGCTGGTGGGCGCGCTCGGACTGCCCTGCGAAGGCCCCGGCCGTCCCGTCAGCGCCGGAGAACTGGCCAAGATCTACCCGGGCATCGTCCCGTGGTACGAGCGGCACCCCTACCTGCTGGGTCTCCTGACGACCGGTGTCGTGGCGCTGGTCGTGCTGGCCGTCGTCCTGATCGCCATCTCCATGGGAGCAGGGTCGTAGCGTCCTCGCCCGGCGGGGCCGCCCGCGCCCCTCTCGGCGGTCATCGCGTCCCGGAAACGGGAACCGGCCGCACACGTGACCTTTTCCGGCTCATGCCCCCGGACGGGGCGACCGTCCGGCAGAATGACGGCCACCGGCGCCGGTCCGCCGACCGGTCCGGCAGGTCCCGGGATTTATAAAGCGGAGATAACGGCCCGCAAAGCCGCAGGTCATCTTCT # Right flank : GGCTCGCCCGATGACACGCAGGCGAGTTCCTTCGTAAGCCCTGGGCGCGCGGGGGAGTCTTCGGCTGTCTCCGTGAAGATGTTCGCGGGGCGCCTGCTGCCCTCTCATGACGGAAAAGGCCTTTGAAAGCACCGCCCTGAAAAGGACCATCGCAGCCTTTCTACCTGCGCTGATGCATTACCGGCGGACCGCTGCAAAAATGGGGTCTGGAGAGACCAGTAAGACGGCTTTGACCTGCGACTTTACTCTTGGGTCGCTGATCATCCCTAGAGGGATCGCAACAGGGGGAGCGCGTCCGGCCGCTGCCGGATGTGGGACGTCGCTGATCATCCCTGGAGGGACCGCGGCTCCGGTCGTGGGACGGTGCGGGTGGGGCCCGAGTGCGGGAGGTCTCCTGTGCCGTGGTCGGCGGGAGGCATGGTGAAGGGGCCGGGGGTTTCCCGGCCCCTTCGCATGTGATGGGAGGAGCGGCCTCAGCCGGTCCGGCGGCGGGACAGGGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 2863-2590 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000003.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2862 29 100.0 32 ............................. GTCGGCGCCGCTCTCCCGAGAGCGTGGCCGAG 2801 29 100.0 32 ............................. CGCGAGCAACCAAGCAGCAAGCCGAGGCGGAA 2740 29 100.0 32 ............................. TGGACCCACGCCATGGACTGCTGTTCCAGCCC 2679 29 100.0 32 ............................. AAACAAATCCGCGGCTGGGTGCGCGAGGGCAT 2618 29 82.8 0 .....G...A...G.....A..A...... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCTCGAACGCAACGGGATGGTCGAACGTCTCATCGTGAACACGCGGCCGATCGCCGTCGAGTACCGGATCACGCCGCTCGGTAAGACGCTCCAGGACCTCATCGACGCGCTCCTGGAGTGGTCCACCGCCAACATGCCCCGCGTCGAGCGCGCACGCGCCCGGTTCGACGCGGAGGAGGGGTGAGGAGGAGCGGCGCGGTGGGCGTGCGCATCCAGCGTTTCCCCTGGCCGGAGGGGAACGGGGTGGGCGGGCGGGGCGTGGCCTCGGAGCGGTCCGCGTTGGGAACGGGCATGTCCTCGACGCTGTGACCGGCCGTGCGTGGTGCCGGACGCGCGACTCCGGAGCCGGGAGCGGGGCCTACCGCCACAGGCGGGGGAGGCGAAGACGTGAACTGTTCGCGGCTTTTGTGACTCCGAATGGTTTTTCTCGCCGACTGGGCGAATTTCAAGAAGTGGTCGAAACGAGGGGTGCCTGCTGATAACGTCCCAGGTCAGTAAGT # Right flank : GGGACCGGCACTGGTGGCGAGCCGCTCGGCTTCTGCTCCCCGCGTGCTCGCGGTCCGGGCGCGGCGGGTCGCGGCGGGTCACCGACCTGGCCGGGGGCCGGTCATGGCCGGGCGGCGCGGGCGTCGCGGACGGCGAGGGCGATGCGCAGGAGGGCGGTCGCGGTGCCGGCGGCCACGGCGGCACCCACCGAGACGGCGAGGTCGGGCACCCAGGCCGCGAGCCGGCCCGGCCCCATCAGGCCCGTGGTCAGGGCCGGCGCGGCCCACGGCAGCACCCCCGCCACGCACCAGGCGACGGTCGAGGTGAGGCGCCGCCGGAGGGGGAGGGGCGCGGCCGGGCGGCGCAGGAGCAGGGCCGAGCGGAGCGCCGCCAGGACCATGGCCACGGCCAGGGCGGTGGTGCCCCACACGGCCGCGTGGTGGGCGGAGGCGGACGGCGCGTCGGCGGGCGCCCCGCCGCCCGCGAGGATCCGGGCGGCGCCGAAGCCGACCTCCATGAC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 498969-499668 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000003.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 498969 29 100.0 32 ............................. GCCGTACCCATGTTCGCGGCAACGCCCCTGTT 499030 29 100.0 32 ............................. AGAACGCAGCACCGAGGAACTCCACCGTCCTG 499091 29 100.0 32 ............................. TAGGGGCCGTCCATCGGCGCGGCGGCCTGCCC 499152 29 96.6 32 ............................T CCATGGTCGGCGAGAACCCGAAGCGCCCCCCT 499213 29 100.0 32 ............................. CTCACAGGGCGGCCCACAAACCTTTTGAGTTT 499274 29 100.0 32 ............................. GCCAGGGCGCCGTCCAGGCCGATGGCCTCGGT 499335 29 100.0 32 ............................. TTGCCACCCTCGACGCCTACGCGCGGTGGTGG 499396 29 100.0 32 ............................. GAGGCGGGCACCTGGTCCGCCCCCGCCAAGAA 499457 29 100.0 32 ............................. CCGGGAGGGCCGCTACGAGGCCCTGACCGGTG 499518 29 100.0 32 ............................. GTGACGCCGTCGAGGTCGAGGACGACCAGGTC 499579 29 100.0 32 ............................. CGCCCCCGTGCCGGGGTCGTGTACGTGCCGAT 499640 29 89.7 0 .........................GTT. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GTAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCGTCACCGCCGACGGCAACCGCGTCCTGTCGGCGGCGCTGCCGCGCCGCTCCGACGAGGTGGAGGCCTGGCTGGCGGAGCTGCTGCCCCGCTCCTGAGATCGGCTTCTGCGGGGCCGCTCTTGGGGGTCCGCTCCGCGGTCCCGCGCCGTCGCGGCCCTGCCGGAAAGGCCTCGCGGCCCCGCGCCGCGACGGGGCGGGGCCGCGAGGCCCGCCGTACCGCGAGGGCCGGCCCTGGGGACGGCCGGCGCGATCCCGGGGAGGCCGTGAGGCGCGGTCCTGCGGCGTGGCCGTGGCGTTCCCGGGCACGGCAGCCTCACACCCGGCTCCGGGAACGGACGCGACCACCGCGGCGGCTCCGGCCGTTCCCCGTCTCGCGGTTTGCGGCGAGAAGGAATTCCGGCAGAATGACGGTCGCCGGAAGCGGAATCTGACCGCTGTCGCGCGCTCCCAGGTTTATAAAGCGGAGATAACGGCCCGTAAAGCCGCAGGTCATCTTCT # Right flank : GACCGGATCCGCGAGGCCCTGCGGATCAAGCAGGCTCGGACCCGACAGGTCCGGGGGTCTCTACGCCGCGGCCGTCTCCCACCCGGACGGGCCAGGGTCTGCGGTTCCCGCGCTGATGCCGGGACCCGAAGTGGTCACGGACCGGTGGTGTGCGGGTGAAGCAGATGAAGGGGACGGCTCGCGATCTCCCTCCGGGGCCGTCCGGGCCGCCTGGTTCCACGCCGAGCCCGGCGTGGGGCTGTCGGTATTCCAGGTGTCCTCGTCCGGCCGGACCCGGCGACAGTACGTGACCGTGGGTCTACCTTCACCGATGGGCATTTCCTCGCAGGTAGGGAGCGCGGATGGGCGGTCACGAGAAGCCGGACTCACAGGACAGCGGTAAAGGCCCGAAATGGGAACAGGACGGACAGCAAGGGAGCGGTCACGGCTCTCAGACCATGCCCGGCTCCTCCGGTGACGGCAAGGAACAGAAGTGACCGATCCGGAGTACGGCCCGGACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 27951-28296 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000018.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 27951 27 100.0 37 ........................... TGGGCTGGCTCCCCGACATTCAGGGACGGCACGAGTC 28015 27 100.0 37 ........................... ACCGGGTGGATCACCCACTGGGCCGCAGGCAGGTGCC 28079 27 100.0 39 ........................... ACGGTGATGGGGGTCAGGGTGTAGCGGCCGGGACTGGCT 28145 27 96.3 37 ...........T............... GTCACCTCCCCCTGGCTGGACGGCCTGGCCGCCGGTC 28209 27 100.0 34 ........................... AGGTTCGCGCGATCGTTGCGGTGGGGCTCGAACC 28270 27 85.2 0 .....................CC.GG. | ========== ====== ====== ====== =========================== ======================================= ================== 6 27 96.9 37 GCTGATCATCCCTGGAGGGATAGCAAC # Left flank : CCACGATCGTGCCCGGCGGCCCTGTGCGACTGCCACATCGGCTACGTCCACCTGGAGCCGCTCGGGCTCTACGACGTGTTCCGCGGCGGCGTGCTGGAGCGCATCCCCGCGGGGTGGGGGGACGCGACGCCGGCCGGCGCGGTGAGCGCTGACGTCGAGCGGTGAACGACGACGCCGAACGGCCGTCCGGACGAGGGCCTCGCCCGGCCGGACGGTGCGATGACGCCTTTGAGCGCGCGGACGCGCCGGAGCAGGGGCCGCCGCCTCCGATGCCGCTCCGCAACGCCTCTCCCGGCCGGGTGACGGAGGGCCTCCCGCCGGGAGGGACGGGGGTGTCCGCGGCCGGCGCGCTCTCGTCGAGAGCGAGGGCCGACATCGCGAGAGGAAGACTGAACCGTAACGCTTCCACCTGCACTGATGCACTACCGGCGGATCGCTGCGAAAATGGGTCTCCAAGTGACCATCGAGGCGGCTCTGACCTGGGACTTTACTCTCGGGCC # Right flank : CACGCCTCAGTCCCGGTCGGGTGCCGTGTTCAGGGTCTCGCAGATCTGGAGGAGCCGGGCGCGTAGCGCGGCGCCGCGTTCGGCGAATGAGCGTTGCGCCGTGACGTATTCGGCCTTGCCCTCGGGTGTCTCGATGGCGACGGGGGTGTAGCCGTGCGCGGACAGGTCGTAGGGCGAGGCGCGCATGTCGAGTTCGCGCACGTCGCGGGCCAGTTCGAAGCAGTCCAGGACGAGGTCGCCCGGCACCGCAGGGGCGAGCTTGTAGGCCCACTTGTAGTAGTCCATGGTGGCGTGCAGGCACCCCGGCTGGTCCAGTTCGACCTGGCTGTCGCGGGTGGGGTGCAGCTGGTTGAGGGGCCGCGCCTCGGGGGTGAAGAAGCGGAAGGCGTCGAAGTGGGAGCAGCGGATGCGGTGCTCCTCGACGACGCGGTCGGTGCCCTCGGGCCCCAGGCGCAGCGGCACGGCGGAGTGCCGTACCTGTTCGGGCGGGAGCCGGTAGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGATCATCCCTGGAGGGATAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 7089-6328 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000012.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7088 29 100.0 32 ............................. GTCAGGCGGGCGCACTGAGGGGCGGGATGCGA 7027 29 100.0 32 ............................. GCCTCATACGTGAGGTGAGCGTGACTGGACGA 6966 29 96.6 32 ............................C CACGTCGCGCGGCTGGTCCAGCTGTAGCGGAA 6905 29 100.0 32 ............................. ATCAGGCGCATCTCGGGGGTGGCCGGGCGGAT 6844 29 96.6 32 ..............T.............. GCCATACGGCCCGGCGGGTGGACACCGCCGGG 6783 29 100.0 32 ............................. ATCAGGCGCATCTCGGGGGTGGCCGGGCGGAT 6722 29 96.6 32 ..............T.............. GCCATACGGCCCGGCGGGTGGACACCGCCGGG 6661 29 100.0 32 ............................. ACGTCCTCGGAGTACTCGCGGACGCTGCGCTC 6600 29 100.0 32 ............................. GGGTGAGCTGGGCCAGAAGCGGCCACAGGCCG 6539 29 96.6 32 ......A...................... TCCTCGTGGCAGGGGACCAGGTCGGCCTTGCG 6478 29 96.6 32 ...........A................. TTCAGCAGGTCGGTCTGTGATGGGCACGGTGT 6417 29 100.0 32 ............................. GTCTCCTCGACGTCGGCGCTGACCGCCGATGA 6356 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GTAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CGGCCAGCTCATCGAGACGGGGCGGGCGCCGCACGCGGTCATCGGGGCGCTGCTGGACACCCGCTACCAGGAGGAGGGCGCGCTCATCGCCGAGAGCGGCGGCGGCGGCGAGGAGGCGGTCCAGCAGGGAGGCCCCGCCGACGAGGCCGGCCTGCGGCCCGGCGACGTCATCGTCGAGTTCGACGGGACGGCGGTGCGCGGCTCCGACCAGCTCATCACCCTCATCCGCGGCAAGCTGCCCGGCGACCGGGTGGACGTCGTCTACGAGCGCGACGGCGAACGACGGACCACGACCCTCACCCTGGGCGCCTCCGAGGAGTGACCGCCGACGGGCGGGTGTTCCCGCGGTCGATAGGAACTCCTCCCGGCCGTCCCCGGTGCGGACGGGGTGGTTCTCCGGCAGAATGACCGTCACCGGCGTGGGACCGTCGCCCACTCCGGTGGGCTTCCGGATTTGGTAAAGCGGAGATAACGGCCCGCGAAGTCGCAGGTCATCTTCT # Right flank : TCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAGCCCCGCGCACGCGGGGATGGACCGACCTTCAGCCCACGCTGGGGGCGGACTCCGCTGTAAGCCCCGCGCACGCGGGGATGGACCGCGGAAACCCTGGCGAGGAGGCCCGAGCGGGACGTAAGCCCCGCGTACGCGGGGGAGTCCCGGGCTGGTTGGAGTACAAGGCCCGGAGTGCGTCCCTGACGAGAGGGCACTGTGTCCCCACTATCAACTAGGGACCACCTAGTCATTCGTCGTCCAGATGTTCGCCATGAGGGAGATGGCGCCCCGAGGGGCGACAAGGGCTGCTGACTCCCAGGTGATCCGGTCCCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 1-766 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000020.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================ ================== 1 30 96.7 31 ........................G..... ACTGACGCCCGACCGATGCAGGTTCGCATCG 62 30 93.3 32 ........................G....G GACCGGCTGCACATCCCGCCCTGACGCAGAAG 124 30 90.0 176 ........................GC...A GGTCGGTCTCCATCCACGCGGACAGGGTGTCCTGCCATTTCGGTCGGGGAGGGCGGGCCGCGCCAATCCTGTAATTCCCTTGGAAGGCGTTTCGTGTCTTACTGGCCGTTTCGCCCTTTTCTTGAGAAGTGGTCGAAACCAGGGGGTGTCGCTGGTAACGTCCCAGGTCAATAAGA 330 30 100.0 30 .............................. CCGGTCTCTCCCTCCGGCCGCCGCGCACCC 390 30 96.7 31 .............................A GGGGCTGAAGGAGCTCGAATCGGTGCTGGAG 451 30 96.7 31 .............................A GCCCCCACAGCAGGTAGTTGCGCCAGCCGGA 512 30 100.0 32 .............................. CCTCGGCGCGGAGGATGGCCATAGCCCGACTG 574 30 76.7 11 ...................CCGC..A..TG AACCGTGAGCT Deletion [615] 615 30 83.3 31 ................T.......GA..GT ACCCGTCGGCCGGCCCCTTGCCCCTCTGTTT 676 30 83.3 31 ...AG...................GC...T ACACCGACGCTCACGGCTACTGCTGGCCAGG 737 30 76.7 0 C..........T..T.........GGG.G. | ========== ====== ====== ====== ============================== ================================================================================================================================================================================ ================== 11 30 90.3 44 GTGCTCCCCGCGCACGCGGGGATGATCCCC # Left flank : | # Right flank : CGGTCTACGCGGTTGTGGTCCTCTCTGCGGGCCTTGTGTGGTGAGAGCGCCCGCGATTGTCCTGGTCGCCACTGTTCCAGAGCCTGCCCGTCCACCCGGCGCGCTCGCTGCCTGGGGCCAGGACTCCGAGATGGCCGCGCGTGGCTCCCGCACCGTCGCCACCGACGTTCCCGGTCTGGTTCCTGTGGCCCGCCCGGCCGGCCCTTGGCGGCGCGGCGCGAGCGAGAACGCCGTCGACGCGCGCTCTTGGACGTGCCGGGCTCCTTCGGCGGAAGGCGCTCCGGCAAGGGGCGCCGGATGACTCGGGGAACACGTGTCCGCGGGACTCTCTGTTGGCGTGTCCCCGGCGGTGCCCCGCGGAGCGGGAGTCCTGGCCGGGAGTGGCCCGGTAGAAGCCTGCCGGGCCGTCGGCCGCGACAGGTCTGTCCCTGGCCTGGGTGCCCGTCTCTGTCCCGTGGGCCGCGGCGACCGGCAGGAGGCCCCTTGCGTCGCCGACAGCG # Questionable array : NO Score: 3.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:-1.60, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65-279 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000030.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 65 30 96.7 31 .............................C CCGCGTCGGAGGCGGTCGCCACGCCCAGGCA 126 30 100.0 31 .............................. CCGACCTGACCGCGCACCTGGCCGAGGTCGC 187 30 96.7 31 .............................T GGGCGGCCATGTGACGGCGCAGGGAGTCCGG 248 30 96.7 0 .............................A | C,G [273,276] ========== ====== ====== ====== ============================== =============================== ================== 4 30 97.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GCCGGTTTCTTAAGAAGTGGTCGTGAACGGCTTCGGAGCTCGGTAACGTTGCAGGTCAGTAAGAG # Right flank : AGCCGGACGACGTTGGTCTAGCCCCTCTGGGCCGGTCTTGGCAGTGGCTTCCGTGGTTCTCCGAGTCACTGTCCCGGGAGGCGCCCACAGCCTCCGGATCTGTCTGAATGAACCGGTTGGCGTCGTTCTCCTGCCGCTGAAGCCGGTGAATACAGGACGATGCCAGCGGCGTGGTCCGGCAGACCCGGCAGCACATGCTCCGCTGACACCACCCGGCCGCGCTCATGGGCGCGGGTTCCAGGTAACCCTCGTACGGGAATCGTTCCCGTTCACAACGGGACCTCGCGGTGAAGGTGAGCCGAGCATCGCGTGCTGACGCGGTACGGCCGGCCGGTCGATGCCGCCTATGTACAAGTCGTGCCCCGTCGGTGGCGCTGTGACCGGGTGATACGAGATTCAGCGTCACTGACAGGGCACTTCTGAAGTTGAGCTGGCCTTTATGGGACAAATCCGGCTGGTTACAGTTGTCCTTCCTTCACTGCTTTGAGGAAGGACGACCA # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21-232 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000033.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21 29 96.6 32 ..............T.............. TGGTGGCGGAACCGGTGCGGGTGGACTCCGTC 82 29 100.0 32 ............................. CCCCAGCCAGCCCGGTCGCGGTCGGTTCCGCT 143 29 96.6 32 ................T............ GTATCTCGGCACGTCGGGGTACTGCTCTGCTG 204 29 82.8 0 .......................CCGGG. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GGCTGACCACGCCGGGATTCG # Right flank : GGTTAATCAGCTCGCGGTCGGGGAGTGGTCTTTCGGCTCGGGCGGTGAATCAGATCATCGTCGCCAGGCTGACGTGGGATGTAGTGGAAGCCGTCCTTGGTTTCGGGGTCGTAGTGGATGACCGCGTCCTCCTCCTCCAGGAACGCCTTCCAGTTCTCCAGGCGCTTAGCCTCGTCCTTCGAGATTTTCGCGCCGGCACGCCGTCGCGCCTCCACCCGGAGCATCGCCACGGGGTAGGACCAGCGGTGCTCAGGAAGGACGTGCCACGGAATCAGGTCATCGTCTCGGACGATGCGCCGTTCCAGGCCTCGACGGCGCCGGAAATTCCCCCAGAGTGAGGGGACGGTCTCAATGTTGTACTTTCGTTTGTACTCCGCCACCATCCAGGCGTAAGTACGCCCTTCTTCGAACCATCTGATGACTTCCTGCTCGTCGACGATCTTCTTAGCCCCCAATGGACTCACCTTCTGGTTGATTTCCGCTACTGTTTCGCTTCACTA # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2150-1690 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000029.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2149 30 96.7 32 .............................A AGACCGAGGTCGAGGTGGCGTCCGCACCGTCG 2087 30 100.0 31 .............................. CACCGTCGACGCGAAGGCGTTCGCCGCGGCG 2026 30 96.7 32 ............................A. GACTCCCCTGCTTTTCGCTGGACCGTCCTCGG 1964 30 93.3 31 ............................AG TCCGGAGAGTCCGGTCGTAGCGTTCGATGGT 1903 30 100.0 31 .............................. GAACCACATGTACGGCTACTCCCGGGGTCTG 1842 30 93.3 32 ............................TA ATTACGAAAAGCGAGTCCCATCATGGGACGAA 1780 30 96.7 31 .............................G ACTACAACCCCAACGTGGTGGCTCCGCCGGA 1719 30 90.0 0 .........................G..GG | ========== ====== ====== ====== ============================== ================================ ================== 8 30 95.8 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : GGGGCGGGATCACTCTGCCAGGAGCCCGCCTCGGATTGAAGAAGCAACGTCCGCGTGCGCCTCTGCGCCAAGGTCCGCAGGTCTTTGCTTCCGGCTCTCCGGAATGGCGGAAGGCGCACGCGGTTTCCAGTCGTTTCCGAAGGTTCGTCCACGACGGTCCGCCCTACCGGCCCTATCTGGCCGTGCAGCGCACCCTCCGCCCTGCTCCTGGCGGCCCTTGTTGGGTTTACCGGTGAAGGGATCGTGGCGTGGTTTCGGGGGGAGTCGCGGCGTTTGTCGGCGTGTTTTCTCCGGGTGTGCCCGATGTGTTCGAGGCTTGCCTTGGGGTTTGTGAAACGTGTTCGCTCCCGATGGCCTGCCGTTTCGGCCGGGGAGGGCGGGCCACGCCAATCCCGCAATTCCCTTGATGGGGGTTTCGTGTCTTACTGGCTGTTTCGCCCTTTTCTTAAGAAGTGGTCGAAACCGGGGGTGGTCACTGGTAACGTCCCAGGTCAATAAGA # Right flank : GCAGCCTTGGGGGAACCCCGGGTGCTCTAGCTCGGCTTGTCCCGTCCGGTGTCACGCCAAATCTGGCGTGGGGCCGCTGGTATTCCAGGTGTCCGTGTTCGGCCGGATCCGATGACCCTAGGTGACCGTGAGGCTACCGTCGCCGGTGAGCATCCCCTCAACAGGCAGGAGCCTCATGGGCAGCCACAGGGACCCCGACAAACCCACTGAACTCCGGCCGGGGCGGCACCGGCGACAGCTCCGGCGGCACCAAGCACGGCTCAGAAGGGGTTCCGCCCCAATCTGGCGACGGGCAGGGCGGCAAATGATCCGGGCCGGCGCGCGGATCGCCCGCGTCCTCACCGCCAAGGGCGCCATCCAGGACCCCAAGGTGCACCGCGCGGTGCTCACCGTGAACCGCGACGCCTTCGTGCCGGCCACCGTGTGGGCCGCACGAGACGGCTGGTATGAACCCCGGCCCCGCGACACCGACCCTGAGGTGCAACGGTGGCTCGGCGAGG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4654-4502 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000029.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4653 30 96.7 31 .............................C CGCAGGAGGGCGCGACCTGGGAGGCCGCGGT 4592 30 96.7 31 .............................G CGGCAACCCTGACAAGCCCACCGATAGCAAT 4531 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : | # Right flank : GCGACCTTCTGGCGCTGTGACCAGAACTTCCTGACAGGCGAGAATCCCCGCCCTAGGCTGGCCAGAGGATCAGCTGGATCACCATGGAACGTGGCTTCGCTATGCCCGGACAGGGTGCGCGGCCTCCGGTGGTGCCGTGGCCTCGCCCGGAAAGAACCCGCCGAGAAGAACGGCCTCAGTGAAGGTCATCGGGAGGAGCGGCGGCCGGAACGAGACGTGTCACGCGATCGCGCGCACTCGATGTACGCGCCGCGTGGTTCATGACCGGAAACCCTCGAACCCCCGCGCGAGGGGCCGCCCGCGCCCTGCTGCTGCGCATCGTCGACCACGGCCGCGTCTTCTGGGCCACTCCCGGTGGCCCGCTGGAGGTGGGAGAGAGGAGGGCACGACCCTGCGGGAGGCCGCTGAAGAGCTCGAACTCGACGGCATCTCGCTGTCCCCGCGGGCACACCACACCGCTTGGGACGCCTGCCTGCTCATCACCTGAGACATGTGAGAAC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 1-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000028.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. ACCTTGAACGTTTCACGCTGCATCCCCGGGGT 62 29 100.0 32 ............................. GCGGCGCGGCGTGACCGGGAGGACGGCGATGC 123 29 100.0 32 ............................. GCGAAGGGCAGCACCTGTTCGAGGACGGTGCC 184 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : | # Right flank : GGTACCGACGGCACGACGGTACGACGGCGCGCAAGGGTGGGAAGGCGCCGATTCGGGCCGGTCAGCGATGGCGCGTCGAGCGCGCGCACGCCTGGTGGAACGCACTCCACCGGCCTGCCCGCCGCCACGGGTGCCGCGCGACCGTCGTCAACGCCTTCCGCCCCCCGCGGACACGATCATCAGCGCCCTCGGCCTGGTCCGCCGGGCCTGGGCCACCCACCGCTGGGATGACCGCCCGAAGCGACGCCCGTGAGCCCCGGCCACCTGCCCGGACCCGTGCGCGCGGACGGTTCCCGCCGATCAGCGCCCCTGTCGTGGTTCAGTCGGCGCGGGCGTCGTAGGTCTCGCGGTTGGCGAGCACGTCGTCCATGTGCGCCTCGGCCCAGGACTTGAGGCCGCGCGTCATCTCGTACAGCGACAGGCCGAGATCGGTCAGCTCGTAGGAGACCGTGACGGGCACGGTCGGCACCACGGTGCGGGAGACCAGGCCGTCGCGCTCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 5510-5661 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000028.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5510 30 100.0 31 .............................. AGGCCGCCGACACCAACCAACGCCTCGGCAG 5571 30 100.0 31 .............................. TTATCGGCGGTTACCACAACGAGCGGTACAC 5632 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 3 30 98.9 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ACGCGGCTCGGCGCACGCGCCGTCCCGGCGGGCAGCCCGCGATCTCACCGTGGGCGTTGGTGCCCCAGGAGCTCAACCATCCGTTGGTGCCGGCGTGACGCAGCACGCCCTCGGGCCAGGTGGGAGCCCAGCGCGCCACAGCGGTCCCACGCAGGAACACGCGCGAGGACACGCGGAACCCGTGGCGGGAGCTGATGGCGGTGGTGAACACGCCATCACGCTACCAGCAGGCGAGCGGAGGGAGGCGCCCCCTCCCTATCGCGACGAGCGCGAGGCGGTGCCGAGCGGGTTCTTGAACCGTAGGAGAGGTCACGGGGCGAGACCGTTCCCCGGCCCGCCTCATTTCGTGATTTCGTGACGGAATGGCTGACAAGCCACGGGCCAGTCCGGTACGGCTGGTGTCCTATTGCCTGTTCTGTTGCCGGATGCGAGTTTCGCCCTTTTCTTAAGAAGTGGTCGAAACCAGGGGGTGCCGCTGGTAACGTCCCAGGTCAATAAGA # Right flank : AGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000027.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. ACCTTGAACGTTTCACGCTGCATCCCCGGGGT 62 29 100.0 32 ............................. GCGGCGCGGCGTGACCGGGAGGACGGCGATGC 123 29 100.0 32 ............................. GCGAAGGGCAGCACCTGTTCGAGGACGGTGCC 184 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : | # Right flank : GGTACCGACGGCACGACGGTACGACGGCGCGCAAGGGTGGGAAGGCGCCGATTCGGGCCGGTCAGCGATGGCGCGTCGAGCGCGCGCACGCCTGGTGGAACGCACTCCACCGGCCTGCCCGCCGCCACGGGTGCCGCGCGACCGTCGTCAACGCCTTCCGCCCCCCGCGGACACGATCATCAGCGCCCTCGGCCTGGTCCGCCGGGCCTGGGCCACCCACCGCTGGGATGACCGCCCGAAGCGACGCCCGTGAGCCCCGGCCACCTGCCCGGACCCGTGCGCGCGGACGGTTCCCGCCGATCAGCGCCCCTGTCGTGGTTCAGTCGGCGCGGGCGTCGTAGGTCTCGCGGTTGGCGAGCACGTCGTCCATGTGCGCCTCGGCCCAGGACTTGAGGCCGCGCGTCATCTCGTACAGCGACAGGCCGAGATCGGTCAGCTCGTAGGAGACCGTGACGGGCACGGTCGGCACCACGGTGCGGGAGACCAGGCCGTCGCGCTCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 5510-5661 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWS01000027.1 Marinactinospora thermotolerans DSM 45154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5510 30 100.0 31 .............................. AGGCCGCCGACACCAACCAACGCCTCGGCAG 5571 30 100.0 31 .............................. TTATCGGCGGTTACCACAACGAGCGGTACAC 5632 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 3 30 98.9 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ACGCGGCTCGGCGCACGCGCCGTCCCGGCGGGCAGCCCGCGATCTCACCGTGGGCGTTGGTGCCCCAGGAGCTCAACCATCCGTTGGTGCCGGCGTGACGCAGCACGCCCTCGGGCCAGGTGGGAGCCCAGCGCGCCACAGCGGTCCCACGCAGGAACACGCGCGAGGACACGCGGAACCCGTGGCGGGAGCTGATGGCGGTGGTGAACACGCCATCACGCTACCAGCAGGCGAGCGGAGGGAGGCGCCCCCTCCCTATCGCGACGAGCGCGAGGCGGTGCCGAGCGGGTTCTTGAACCGTAGGAGAGGTCACGGGGCGAGACCGTTCCCCGGCCCGCCTCATTTCGTGATTTCGTGACGGAATGGCTGACAAGCCACGGGCCAGTCCGGTACGGCTGGTGTCCTATTGCCTGTTCTGTTGCCGGATGCGAGTTTCGCCCTTTTCTTAAGAAGTGGTCGAAACCAGGGGGTGCCGCTGGTAACGTCCCAGGTCAATAAGA # Right flank : AGGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //