Array 1 473607-474578 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040671.1 Thermosynechococcus sp. CL-1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 473607 36 100.0 34 .................................... GACTTGAGGCAGCGTCTTTGGTTGATTTTTGCTG 473677 36 100.0 34 .................................... GTGACTGGAACCACAAGAGGAGTTGTGAAGTAGG 473747 36 100.0 33 .................................... GGCGTTGGTCACCTATCTATCTATGGCATTGGG 473816 36 100.0 37 .................................... GTCGACGACCTAGGCAAGAACAGGACAGCGACAGGAA 473889 36 100.0 33 .................................... ATCCACCGTTAGGTGGTAAGTAGTAGCACAAGG 473958 36 100.0 39 .................................... ATCCCCACGACTACTGCTCCATCCCCACGACTACTGCTC 474033 36 100.0 35 .................................... TTGCTCCTTGGCGGAGCAAGCCATACTCAAGTTTA 474104 36 100.0 38 .................................... CCTCCCCCGTCCTCCCCGTCCTCTTTCTGTGCCTCCCC 474178 36 100.0 38 .................................... CAGAGGACAAGGCGGAACAGAAAGAGGACGGGCAGAGG 474253 36 100.0 34 .................................... TTAGTGATGCTGAATATTGTTAAGAACCCCTCTT 474323 36 100.0 37 .................................... AGGCAAACGATAATGATGCAGTTCCTAGTAACCCTAA 474396 36 100.0 36 .................................... CTACTGCTGCCCCGTCCCGTGCTCAGCGCCCTAAGG 474468 36 100.0 39 .................................... TTCGTGTTGCATTAGTAGAGAGAGCGCAGCGGGTTGCTT 474543 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 100.0 36 GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC # Left flank : GATTTAGATAAATAATACCCTCACCGTTAGGAATTCCAGCAATACTGCTAAGGCGAAGATCACTTGGTATATCTGAAGGTAGATCTGGCCGCCCCGATTGTTGCAACTGTTTTTTAATAGCAGAGTATAATGCATAGCCATGATCTGCTGGCAGTGTTCTTCCACGCAAGCTGTAATGGATTTCAAGAAAGTGATTGTGGCTAGTCATGACGCTATCTTATTATCCCCGCCTAATCTGAATGCTTTCCCTCAATTATGGATCTCTGGAGCACTGCCAAGGGTAGCCACTGTCTAGTTTCAAGAATCATGCTAACGGATAACTTATAGTTGTCAACTTACAAAAATTTTAACTTCTACTGTAGGTAACCACAAGGAGCAAAAAAGCTTTTGGATACAATTTTTTATTTTTATTCAAGAAAGTTAACCAACCGCTGGGCTAGCCCACAGCACCAGAGGTAGAGGCACCGACCATGGTTCGCGATAACGGGCTTATTCGCTGG # Right flank : CAGCGGCGCCCTAGAAATGCCTCTAGGACTAGCTTAGCACAGTCACTTTTCAAGCACCTCAGGCACTTTGTTTTTTTGTGACTGTAAAATTTTTAGCCTCGGACAGTATTCAGTTGTCAATCCCGCTCTGGGGAATAGGTTCAGAGATTTTCAAGCACCTCTAAATCTAACAAAAACTCTCAAACCTAGTCAAGGGGCTGTATTTGAATATCGGTGCGTTCGGAGAATATTTGAGTCCAGAGGTGCTTGTATGCTAAAAGATTTTGAAGTTCTGCTCCGACATTGGCCATGTCCCCGCTCGGTTGCAAGCGCATACCCGCTCAACGCATTGGCTGCACAATCCTACGATTAGGAGACTGTCTTCCTTTGTGAGGATTTTTTCTAGTTGCCAGCGCAGCTTTTCCCGCTCCCGTGGCGTGAGACGACAGCGAAAAATCGAGAACTGTAATCGTTCACCATAGCCCTCTAACTGCTTATAAGCCTGTCGCCATCGCTTGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 541829-545511 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040671.1 Thermosynechococcus sp. CL-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 541829 36 97.2 34 ...................................T GATTTACCATAGAAAAACCATGCAGGTGTGCGAC 541899 36 100.0 35 .................................... CCTCTACCTCTGCCTCTACTGCCTCTGCCTCTACC 541970 36 100.0 35 .................................... GTCGCGAACTTTGCTATCAGTATGGCTGCCTTCTA 542041 36 100.0 37 .................................... GATTAGGGTAATAATAAAATATTGGGCGTAAATTAAG 542114 36 100.0 33 .................................... ACCTAGCATAACGTTAAACTCCTAAACTCCAGT 542183 36 100.0 36 .................................... TGCGTGGGAAAAGCGATTTTTTCTTCCTGCGCGGAA 542255 36 100.0 33 .................................... GGTTGGGAAGGCAATTTTTTCTTCGCTTGCGGC 542324 36 100.0 37 .................................... GGGAGAATGCCGAAGTGGAGCATTTGGGTTACCGCTA 542397 36 100.0 36 .................................... ATCTGCGGGGGTAACGTGGGTCTGTTTAGCCGAAAT 542469 36 100.0 34 .................................... TCTTTTGCATCCTCTGAAGATTCAATCTGAGGAT 542539 36 100.0 38 .................................... GCGCTGTAGCTGCTTTAGTTTTGTTTGCGGGTTTTGCC 542613 36 100.0 40 .................................... CCCCTAGAAGGCTCAGGAAGGTGGGTCAAAATCGTTTCAA 542689 36 100.0 35 .................................... TCGTTTAGTACTGGAACTGTTCTAAACAACGCCAA 542760 36 100.0 35 .................................... GCTAAACTCGATGGGAGTATAGAATACCTGATATT 542831 36 100.0 36 .................................... CTTAGAAGAGCTAGAAAACTGTTTGAGAATGCCCAA 542903 36 100.0 35 .................................... CAGCGGGGACGGGCAAGGACGGCAAAGGCGGAGCG 542974 36 100.0 34 .................................... CTTCAATTGCTTTTAGATTTTCATTCAGATAAAT 543044 36 100.0 35 .................................... TAATAAAACTCTAAATTAAGGTTGATTGTATCTCC 543115 36 100.0 39 .................................... TTCGATAAGCCAAGACTGCTTAACCCCAGTCTTAAGGGA 543190 36 100.0 32 .................................... TACTAAACTCTGCAAGTAACAAATTAGCAAGA 543258 36 100.0 36 .................................... AAACCCCCTTAAAAACATCATTGTTTTTCTTGCTTT 543330 36 100.0 36 .................................... GTCTTAAAATCTGCCACAAGATTATAAACGCCATAA 543402 36 100.0 37 .................................... GAGCCGCGTTTAGTTCATCAAAAAAGATTAAGCAAGG 543475 36 100.0 36 .................................... TCTTTCTTGGAAATTATTAAAGGCACACAAAAAACA 543547 36 100.0 33 .................................... TTTTGGCTTCATCGAAGCCGAAGTCTCTTGCAA 543616 36 100.0 33 .................................... ACAAGGCGCGAAACAACGTTTCTTCAACCCCCT 543685 36 100.0 39 .................................... CAGGCAATTGCTCAACTGGTGGTTCAAATTGCATTTATT 543760 36 100.0 35 .................................... AGCCTATCGCCAATCCTTTTTGCGCGAGCCAATCG 543831 36 100.0 33 .................................... GCTAATTCAATAGGGGGCAATGAGCGAGGAATC 543900 36 100.0 36 .................................... TAAAAGGCCTGAGATAACTCAGTCCCCTATCCAGAC 543972 36 100.0 34 .................................... TATTGGTTACTGCCATTAATTTATCTAGCATAAT 544042 36 100.0 37 .................................... TTCTCTTGATTCAAGTCGTTTGTTACCCTATGTATCA 544115 36 100.0 37 .................................... TTAAAGGAAAATTTGGAATAGACAACCTGACGGAAGT 544188 36 100.0 33 .................................... ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT 544257 36 100.0 37 .................................... TTCTCTTGATTCAAGTCGTTTGTTACCCTATGTATCA 544330 36 100.0 37 .................................... TTAAAGGAAAATTTGGAATAGACAACCTGACGGAAGT 544403 36 100.0 33 .................................... ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT 544472 36 100.0 37 .................................... AATTTGAACCTGAAATAATTCCAAAAGTAGCCGCTTC 544545 36 100.0 35 .................................... TTCCCTTCTCAAGGAACGTGTAAATTTCTGAGTGG 544616 36 100.0 33 .................................... ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT 544685 36 100.0 35 .................................... AGATGCCTGCGTTCTGTCTGTTACTCGTGCAATTG 544756 36 100.0 34 .................................... TCTAGAGACACTAAAGATGTTGCAGAAGAAATTA 544826 36 100.0 36 .................................... GCTTCTGTAGGATCGTTAGGTAATTTAGGTAAATTT 544898 36 100.0 35 .................................... TGGGGAAAGCAATTTTTTCCTCTTGCGCTGAGGTT 544969 36 100.0 36 .................................... CTGAAGGCAATTTAGATATTAAAGGCAAGCCAACTA 545041 36 100.0 35 .................................... CGACCAGTAAGCGCAAGACCTTTTGGTAGCTTCAT 545112 36 100.0 37 .................................... ACAGAGAAGGAAGCACCGCTAGGTTATGCTCATCCAA 545185 36 100.0 36 .................................... AAGCGTTAGTAGCACCTATTGAATAAGCTAGAAAGA 545257 36 100.0 37 .................................... TCTCCTGAATGGGATTACATAACTTCTCTACAGTCAA 545330 36 100.0 39 .................................... ATCTCCTTCTGCAGTAGAAGGAGATCCGAATTAGGGCAC 545405 36 100.0 35 .................................... AGCCAAATAATTGACTCCTGTAGGGACTTCGGGAG 545476 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 52 36 99.9 36 GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC # Left flank : TTTCCAGCCCCATTAGGGCCAATCACCGCTACCAGTTCTCCCGCTTCGAGGCGAAAGTTTACCCCCCGCAAAATATCCACATCGGGAATATAACCGGCATAGACATCAGACACTTGGAGCAAGCTCATGGTTCAAAAACACATCGCCAGAGGTTCAACATCCTCAGTATAGAGGTTTCGCCCTGTGTCCCTAATTTTGCTCCTGAAGGCAAGGGATTGCTGTGGTGAATTGAGAGCCTTGAGGGGTTGATCAAGCACCTCTGGACAAAAATATCCTCTCAGCTCGGCAATTTTCTCAAACCCAGTCTCCACAACGCTTTGAGCAATTTCTAACAGATTTAGAGGTGCTTGAATTTTCCCGAAATTCAGTTCCAGAGTGACTTTCACGCCCTGTGACCCTGCGGATCTAAAAATTTTACAAAAACAAAAAAATGATCCCGTCTAGGTGCTTGAAAATGACCTGTGCTATAGTAGTCGTAGAGCGCCTTCTAGGAAGGTGCC # Right flank : CCCTTCCTCCTAAGAAGGGGCTGCAGGGGGGAGATCAGTGCCTGAACCTGAGGTGGTAAGCAAGGTCGCGGAACCAGTAACAAGCATCCCTGACCTTTAGGGCGGGCAGTGTGTCAAAATTGGGGTTAAGTCCTGTACCCAGCGGAGTCAACGGAAACGCAGCAACAATGAAAGCCGTTGCCATCACAGAGTTTGGCGAACCCGATGTTTTAGTGCTGCGGGAGATGCCTGAGCCGCAGATTCAAGCTGCCAATGAGGTGAAAATTCAACTGCGGGCGGCCAGTGTGAACCCCATTGATACGAAGCTGCGACAGCGGGGAACATTTTTTCCCGATCGCCGGCCCGCCATTCTCGGCTGTGATGGGGCAGGGGTGGTCGTGGCTGTGGGTGCAGCGGTGCAGCGGTTTCGCGTAGGGGATGAAGTTTATTTTTGCTATGGGGGCTTGGGCGATCGCGGCGGCTGCTATGCCGAATACACCGTTGTTCCTGAAGTTGCCGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 3 1238569-1240770 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040671.1 Thermosynechococcus sp. CL-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1238569 36 100.0 37 .................................... AAACCCAAGGGAACAAAAGCGCGTTTGCCCAAGAGTC 1238642 36 100.0 37 .................................... TGGTGGGTACAGGCAAGCTTTATTGCCGCCGTTATAA 1238715 36 100.0 37 .................................... GGAAAATACTGCGCCGATTTAATGCATAGGGATGAAA 1238788 36 100.0 36 .................................... GTTTTGGTTTCGCCGCGGAAACCAAAATCCCTTGCG 1238860 36 100.0 36 .................................... AGACGCACCGCCTAGGATTAAAAACCCAATAGGCAC 1238932 36 100.0 35 .................................... TACATTGCACTCTTTTTCACGATATCTAAAATATA 1239003 36 100.0 36 .................................... TATCTAGAGCGGTTATCGACTAACGTGGAGCGTTAT 1239075 36 100.0 36 .................................... TAGATTTGTTGGTGAGAGGCACCACCAAGCAGTAGA 1239147 36 100.0 39 .................................... TACTTCCTTCTGCAAAAGAGCCAGGTCGGAATTCGGACA 1239222 36 100.0 36 .................................... CTGCCCGTCTCATCCCGTTTTGAGATGGCGGTCTGC 1239294 36 100.0 36 .................................... CTTTGGATTGTATCTCCTTTTTCTAGGAGTGTGTAA 1239366 36 100.0 35 .................................... GCGGTCTGCCCGAGATAGATGCCCCGGGAAAGCTC 1239437 36 100.0 36 .................................... TACAAAACCTCTAACATTTCTAAAGTAGTTTTTCTT 1239509 36 100.0 36 .................................... TCGTGAAGGATTTCGAAATTGTAGTCCTCGACGCTA 1239581 36 100.0 37 .................................... TGCATAAGTTCATGCACAATTACGTATAGCTGCCCAG 1239654 36 100.0 44 .................................... CCAATGACTAGCATCAATACTTTGCAGAGCATTTTGGTTAGGGA 1239734 36 100.0 36 .................................... CCTTTATTAAAAGTTTATCGATTACAAGACACGTAC 1239806 36 100.0 33 .................................... CTACTTTTGCCGCCGTTTTTTTAGCCCTAACTG 1239875 36 100.0 38 .................................... TTGTTTGACCTTTTTGTGTCAACACTGCTAATGCAGCA 1239949 36 100.0 34 .................................... CTAAGAAGCCAGATAACGGCCTCTTTCATGGAAT 1240019 36 100.0 36 .................................... TTTAGGGTATGCTTTGTGTAAAACAGAAGTTTTAAT 1240091 36 100.0 35 .................................... TTGTATTCTTAAGGATACAAAAGGCACAACTCAAA 1240162 36 100.0 35 .................................... GGGACTTCTTTTTCTTGTTCTTTGGGGAATTTTAG 1240233 36 100.0 36 .................................... ATCTAAGTAGGCCCTGAGGGCGTTTTCGATAAGCCA 1240305 36 100.0 37 .................................... AAAGGCTTTCTGTATTCTTTCATGTCCAGTAAAAATG 1240378 36 100.0 33 .................................... CCAAAACATAGTGTTCTCCTAAGTAAACTCCAT 1240447 36 100.0 36 .................................... TTAAAAAGGCAATAATTGTGTGGTCAAACTTTTTAA 1240519 36 100.0 37 .................................... CTTAACAATATCCCCCCTTGACCCCTCAAAACTAACT 1240592 36 100.0 36 .................................... CAGCTCAAACTCATAATGAATGACTGTGGAAAAAGT 1240664 36 100.0 35 .................................... TTCAACTTGTAGTTGCATAATTAACCCTCCAGTAA 1240735 36 94.4 0 ..............................A....T | ========== ====== ====== ====== ==================================== ============================================ ================== 31 36 99.8 36 GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC # Left flank : GGCCACAACCCAAAAGCTAGTGGTGGGGGCTGGCCTGCTGTTGGCGTATACAACAGGGTATGTCGCGCCGCTGATTTTAGTCGGAGTATTTAGCGGTGCCTTGCAAAAGCTCTTGGCACTGCGGCAGTGGTCGAGTTGGATTACCCCTGTGAGCGGTGTGCTCCTCATTGCTTTTGGCGTCATTGCTTTAGCCATTCGTCTTTAGTGCTCAAGTCAAAGGGGCAGTGGTTAGCCGATGGCGGCAGCCATGCAAGCACCTCTGGACAAAAATATCCTCTCAGCTTGGCAATTTTCTCAAACCCAGTCTCCACAACGCTTTGAGCAATTTCTAACAGATTTGGAGGTGCTTGAATTTTCCCGAAATTCAGTTCCAGAGTGACTTTCACGTCCTGTGACCCTGCGGATCTAAAAATTTTACAAAAACAAAAAAATGATCCTCTCTAGGTGCTTGAAAATGACCTGTGCTATAGTAGTCGTAGAGCACCTTCTAGGAAGGCGCA # Right flank : TCGAGTTTATTTTTTTGGAGAAACATTATGGGAATACTCTCAGAAGTCCTTCAACGGGCTACTGCATCACCACCTATTACCCTGAAAACGCTTGCCACAGAAGTTGTTGTCCCACTCTACAGTCGCTACAGTGGAGCAAATTTGGCATCCTATTCTAGGCTTGACGAGCGTTTTGTTCAAAAAATGACTTTTATTCCTTTAGGGTTCTTTCTACCAAGCTCTTCCAAAATTCTTTACGCGATTTTGAAAGACGGCAAGTTGCCGTCTGACTGGGCACCGTCCATTCAATTCAGCCGGGACGGAACCTTGATTGACAAAACAGGCTGGAGTGATATTGCCAATATGACCTCATCGGCATTTCGGAAGCTTCCTAGGGGATTACAAGGAAAGATCATCAGTTTATTGCAACTCCAAGCTGACAAGCACGTACTCCTAAATTATTCGGAGTCATGGCAGTCTTTGCTGTGGCTTCCAGCAGAGTATCAACGCTTAGACGTTGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 1930020-1931927 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040671.1 Thermosynechococcus sp. CL-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1930020 36 100.0 37 .................................... ATTCTGGGATCCTTATTTTCGGTCCCAAACCGAAGGA 1930093 36 100.0 35 .................................... TCACTGATCAGGGCGAGGAGACCGCCCTTGCGGCT 1930164 36 100.0 35 .................................... TCATCGTGCATGAACTTATGCACATTTTACTTTCT 1930235 36 100.0 35 .................................... GTCTACCACCTAACGGTAGCGTCAAGCCTTCTCTA 1930306 36 100.0 38 .................................... GAAAATATTGGGTTGGTGAATCTAACGGCCACTCTTGA 1930380 36 100.0 37 .................................... TTTCGCCCACATCGAAAATGATATAGTTACAATACTT 1930453 36 100.0 36 .................................... GTATGGGAAACAAATTATGAAATCTACACTAGGTGG 1930525 36 100.0 38 .................................... GCTTCTTGGGATGCCTAGCGGTTCTCTAGTTTACCTAG 1930599 36 100.0 34 .................................... GTAGGCATACATTGACTTTATCTGGCTCTCCAAC 1930669 36 100.0 38 .................................... TTCGGTAAACAACCGAACAACTTGGCAGTCGTCAAAAC 1930743 36 100.0 37 .................................... CCCAACCACCCGTTCAACCACCTGCTCAGCCACCCGT 1930816 36 100.0 37 .................................... CAGACGGAAGAGAAAGATGCATAAGCATTATTGGTGG 1930889 36 100.0 34 .................................... AGAGGGGTAGAAGGCTTTTAGGATGCTAACAATA 1930959 36 100.0 36 .................................... AAGCTGTTGAAGAAATTGCAAAAAAAGTACGTGAAT 1931031 36 100.0 34 .................................... GCCTGTTGACGTTGCTCTTTTGTTACTTCCTCAT 1931101 36 100.0 36 .................................... ACCGCCTTGGTTATCAGAAGTAACAAAAGCGGGTTT 1931173 36 100.0 35 .................................... ATTGCGCAATTGTAAAAAGTTCTGCCACTTTGTAC 1931244 36 100.0 35 .................................... GATACAGTTGGATATACCGAATTGCCGAATAACAA 1931315 36 100.0 39 .................................... GTAGTAATCCGCAAACGGCAGATTAATTTGAGCCCGCAA 1931390 36 100.0 36 .................................... CAAACTTCTAAGTCCATTCAAGAAGCAGTCGTTTGG 1931462 36 100.0 36 .................................... ACTGTAATTGCGCTAATTCACTACGATAACGCTCCA 1931534 36 100.0 36 .................................... AAAAACCTTTCGCCTAAAAAGTTTTTTGGTTTTTTT 1931606 36 100.0 35 .................................... TTAGCTAACAAAACAAAGAGCTCTCCTGTGTAATA 1931677 36 100.0 35 .................................... CTGCGGGGAAATACCAGTTCCTGTCGTCGACTTGG 1931748 36 100.0 36 .................................... AGTGATGATTACTTTCTTCGGCCTTAGGCTCAGGAA 1931820 36 100.0 36 .................................... CTTCAAAAATATCAACTTTGTTTTCGGAATTAACTA 1931892 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 27 36 100.0 36 GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : TTCAACTCTACTGCGGACTGTCCCAGCAGCGCCATAGTGTTCAACCGCTTCACTTCCCCTTGATCCTAACAAACTGCCAACCTGCTCTTTTCTGGAATAGGGGCACAAGAAAGAACGCTGAGGCGCTGGGACAATTGCTTTGCAGTTTTGCTAAGAGCAGTTAATCTTTCTCTTGCTGACGGGTCAGCAGCACTAAAATTTGCGAGACCCCAGAGAATGCCAGCTGAGTTTTGTCCAAGATTGTGGCGCATGCAAGCACCTCTGGACTCAAATATTCTCCGAACGCACCGATATTCAAATACAGCCCCTTGACTAGGTTTGAGAGTTTTTGTTAGATTTAGAGGTGCTTGAAAATCTCTGAACCTATTCCCCAGAGCGGGATTGACAACTGAATACTGGCCGAGGCTAAAAATTTTACAGTCACAAAAAAACCAAGTGCCAGAGGTGCTTGAAAAGTGACTGTGCTAAGCTAGTCCTAGAGGCATTTCTAGGGCGCCGCT # Right flank : CTGGATTCGCTCGGCAGCAGGGGCGGGAACTCGCATCACCCTTGATTTGCCGATGCCGTCAACAGTTGTTGCAGGTACATCTGCGCAGGGGAATAGTCAGGGTTAAATTCAAGGGTCTTTTGAAAATAGGCGATGGCGCGATCGCGCTCCTGAAGGGTCATGTAGGTAAAACCTAGACTGTAGGCGGGTTGAGTCGTCATCCACTGGCGATCGAAGGGTTCAGCGCGATCGTAGGTTCCCTGCTCAAAGAGATCTAAACAGCGGTGAAAGTAGGGCAGTGCTCCGCGATGTAGACCCAATTCAAAGATGAGTAACCCCGCCACATAGAGCAGGGGCGGATAGCGATCAAAGAAGCGTAGGCCATAGCTGAGGTAATACTGAGCCGTTTCGTAGTCCTTGGCCTCAAAGGCGCGGTAGCTCACCCAAAAAAGGAGATGACGCAGCCATGTGGTGTCCTTCGGCAAAACTCCCTGTTCGACGGCAGGGGCAATTTGCTCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 5 1941603-1940135 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040671.1 Thermosynechococcus sp. CL-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 1941602 36 100.0 42 .................................... TCAAACAAGGTTACGTAGTCCTTGTCGATGGTGTAGCCTGTT 1941524 36 100.0 40 .................................... AACATTTCTAATGGAGATTTTTTCATTGATTTATTTCCTT 1941448 36 100.0 38 .................................... TTAAGATTTTGGAACCCTCTGTTTGAGGGTTTTCCCAA 1941374 36 100.0 37 .................................... AAATCCCCAAAAATGCAACCATCCCAATATTCTTTAA 1941301 36 100.0 35 .................................... AATTCCAAAGGAATTACTGCTAAATTGTGTTCGCT 1941230 36 100.0 37 .................................... CCTAGGGTAAGAAACCCAATTGGGACAAACGCTTTTT 1941157 36 100.0 39 .................................... TTCAGTTCACCAAAACTGAGTAGCTGTGTCACCGCAGTA 1941082 36 100.0 38 .................................... ACCCAAACAATTGCCTCTCGTAGAGAGGCGGACAGAGA 1941008 36 100.0 38 .................................... ATACTAAACCTCCAATGAAACAACAAAAAAAACAAGTA 1940934 36 100.0 42 .................................... ATTCTAAATTTATACAATATTTCCAACATTTCTGTTGGAGAT 1940856 36 100.0 40 .................................... TTGTGCCAATAGACCTTTTAGAATCTTGTTCCCTTCTGTT 1940780 36 100.0 42 .................................... CCGCCTAGAACAAGGAACCCAATCGGCACGAAAACTTGTTTG 1940702 36 100.0 36 .................................... TTGGTTGGTGATTCTAGTTGACTTGCAAGAAAACCC 1940630 36 100.0 45 .................................... ATAAAGTCAATGTATGCTTACCAAAATCATGGTTAGTAGATGTAA 1940549 36 100.0 42 .................................... TTGATCACCGCGTCTGTAGTTAAGTTCAAAATATTAATAGGA 1940471 36 100.0 36 .................................... ACAACTTCTTGATAAGTTGTGCGACCGCAAAGGGAA 1940399 36 100.0 41 .................................... AGGTCAAAAATTTGGTTATTTGAAAGACCACCTAGGGTCAA 1940322 36 100.0 41 .................................... AGGTCAAAAATTTGGTTATTTGAAAGACCACCTAGGGTCAA 1940245 36 100.0 39 .................................... ATCTTGGTATTTGGGTGAAGTTTAAGCCCACCCTCAAAC 1940170 36 97.2 0 ............................A....... | ========== ====== ====== ====== ==================================== ============================================= ================== 20 36 99.9 39 CTTGCTTCCCTTCGGGGAAGTAGATTAAGTGGAAAC # Left flank : TATCATCCCCAACCGCCGAGCTGGTTTTGGCAGGGCTATAGCTTTGCCCCAGAGTATCAAGATCAGGTGGTCTATCGCTGGCTCACAGATCCGGCTGCTTGGAATGCCGATATTCCCCAACTGTTGCGGGAGGGGCGTGTACAGGAAGTTTTTGCCCTACTGTCGGATACGTGGACTAGTCTGGGCTACGGCCTTGAAAGCAACCTGATCACACCCCACCTCGAAGAGATTTACCAGCAACTGTTGGCTCAAGAATTAGCCGCCTCCCAGACTGCACACTCTCCGGGGAGGGATGCGTTACGCTAGTCAATTTTCTCTGCCGACGGATCTATTCAAGTGCCCCAATTTCTGATTCTTGCGTAGAATCCCTCGGAGTCGCTCTAGAAGAGGGTTTGAGTATTTTCAGTGGCTTCGTAGAAAATGATTTGACACCCCTCGCAGGGGATCCCTCGGAACAGGGGGTTGCAATCCGCTCAGGGAGAGGCTATATTGAAGATGCT # Right flank : ATGGAACATGAAGAACGGAGAAATACCAATTTCTGTGAGGGGGTGTTTTCTGCACCCCTAATTGTTTTGTCGCAAGAAGTGTCAAGGCCGAGCTGTCAGTTTCATCCGTGAGCAAAGGGCTGTACCGCTCCCGGAGAGATTAAAATCAGAAAAACCCTCTGGTGCAAATCGGCTGGCCTTGGTGGATGTCTATGTCGTTTCTTGAGTATCTCCATGCAGAACCGCGGCGCGTCATTGTCTTTGATGGCGCAATGGGCACGAATCTTCAGGCGCAAAACCTGACGGCAGAGGACTTTGGGGGCAAGGCGTACGAAGGCTGCAATGAATACTTGGTCATCAGCAAGCCAGAGGCGGTGGCCAAGGTGCATCGGGACTTTTTGGCAGCAGGCGCCGATGTCATTGAAACCAATACCTTTGGAGCCTCCTCCGTTGTTCTCAGTGAATACAATTTGGGCGATCGCGCCTACGAAATTAGCAAGAAAGCCGCCGAACTGGCCAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCCTTCGGGGAAGTAGATTAAGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //