Array 1 1128941-1128001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHAT010000008.1 Listeria marthii strain 2012L-5524 NODE_1_length_1392033_cov_37.3566_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1128940 29 100.0 36 ............................. TCTGATGCGTATAGCTTAATGTTCGATGTGCGTAAC 1128875 29 100.0 35 ............................. TCAACATTGACTCTTTATGTCCGACAAGCATCGCA 1128811 29 100.0 36 ............................. TACATATGAACACCTCATTTCTTATATATCTATTTT 1128746 29 100.0 38 ............................. TTTTTTAAGGATGTTTTTAACATTTACATTTGCCCAAA 1128679 29 100.0 36 ............................. TTAACTGATTCTGTGATTTTTTCAAAATCAGCTTGA 1128614 29 100.0 37 ............................. AAAATCAGCAACTTGGGGAGATACTGCAGATACAATT 1128548 29 100.0 35 ............................. TTCGTAATGTTAAATTTGAGATTAAGATTATCACC 1128484 29 100.0 34 ............................. ATATTAATACCGCAGTAAAATTAAGCAATATTGG 1128421 29 100.0 36 ............................. CTCATGAACTCAGAACTACAGCAAGACTATAACGAC 1128356 29 100.0 37 ............................. AAAAGAACGGCTAAAAGAATATTGCATGATTCGAGGA 1128290 29 100.0 37 ............................. CCTTCTAGATTAGTTAATCTATTTAATACTTGATTAT 1128224 29 100.0 36 ............................. TCAGGAAGTAACACAAAACTACTCTCACGCTCAATT 1128159 29 100.0 34 ............................. ACGCTTGAAATCAATGGTAAAGAATATGAACTGA 1128096 29 100.0 37 ............................. ATATATAACAACGTTTCTTTTTGGTCTTTGTGATTGA 1128030 29 86.2 0 ...............C......CC....C | A [1128005] ========== ====== ====== ====== ============================= ====================================== ================== 15 29 99.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATAATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCAGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAATTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGCGACCTGAGTTATGATGGGAGTAGGCCTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCTCCCGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGCAGTTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1144856-1143856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHAT010000008.1 Listeria marthii strain 2012L-5524 NODE_1_length_1392033_cov_37.3566_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1144855 29 100.0 38 ............................. AATTTCAGTCGCCTTTACTTCCCTGTTGCCTAGATTAA 1144788 29 100.0 37 ............................. CAGGCTTTTGAATGACTCAATATCTATCAAGCTATAT 1144722 29 100.0 35 ............................. CTGTCGCTTCGGGATCAATATGAGCTGCAATTGCT 1144658 29 100.0 37 ............................. TACATTAGTGTATCGAAATCGGTATCGAAAATTTCTA 1144592 29 100.0 34 ............................. ATTTGTTTTATAAATACGTAATAAGAAACGCCTA 1144529 29 100.0 37 ............................. GAATGACGATTGGGGTTTTTTGCGACTACTGTTTTAC 1144463 29 100.0 37 ............................. GTTCCTCTACCTGCATTCAAGTGGACACTAACATGCA 1144397 29 100.0 36 ............................. CTAGAAATCCCTATGAGTTTAGCAGCTTCAGTTTGA 1144332 29 100.0 37 ............................. TCAATAATGTCATCATATAATCCAGTAGTTTGCGAAC 1144266 28 93.1 27 ........................-.C.. TGGGGTTTTTTGCGACTACTGTTTTAC G [1144240] Deletion [1144212] 1144210 29 100.0 36 ............................. AAATACAGGCGATGCGTTCCCACAGTTTGATTGTGT 1144145 29 100.0 36 ............................. CTCGGTTATTGTGATGCAAAGGTGTCTATGGACGAC 1144080 29 100.0 36 ............................. AGATGCTTGGGCAGCGTGGAAACAAACGGCTGTTGA 1144015 29 100.0 37 ............................. CTCTTAGTTTCGCGATAACACTTTCCACTTTAGCTAT 1143949 29 96.6 36 .......T..................... AGTAATGGGACATCAGAGAAAAATTATGTAGACACC 1143884 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 99.1 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCCATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGCGTTTGGTTGTTTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGGTTGGGGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGGTTTTCAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CATTTCTATTTCCTATACAAAAAAGCCAACCAACATGATTTAGGCTTATTTTTTATCCTCCCCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACACCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACTAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGTAAAGAAAGCAACACAATTAGTGAAGTAGAGATCTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGATATTTCAGAACCATGGTACTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //