Array 1 395030-396680 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSPZ010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-043 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 395030 26 100.0 40 .......................... CAATTACGCATAATTTACTCTCCTTTTTTATTTGGTCTCG 395096 26 100.0 40 .......................... TGCACTTAGATTAGTAGATTGTCCCATGTCAATCGTCTCG 395162 26 100.0 40 .......................... ATCTGGTTAACCACATTGAGGAGGAGTACGACCAGTCTCG 395228 26 100.0 39 .......................... AGGGCTTTCGAAATAGCTGTGAAGGTAGTTACCGTCTCG 395293 26 100.0 39 .......................... ATCAATGAAAAGAAAGTAAATCCCAAAAAACACGTCTCG 395358 26 100.0 39 .......................... CGTCTGCTAATTCAGGAACAACCACCACAACAAGTCTCG 395423 26 100.0 21 .......................... ATTCCCGGCGGCTTTAGATAG Deletion [395470] 395470 26 80.8 40 GTGA...G.................. AGCTTGATTTGTTGTACTGACTCTAACATAAATAGTCTCG G [395481] 395537 26 100.0 41 .......................... TTTGTTCTATCCAGCTGACTCTTGTTATAGTACCTGTCTCG 395604 26 100.0 40 .......................... TAAAGTCGCTATCTCTATCTATCGGTATATCCTCGTCTCG 395670 26 100.0 40 .......................... CTAAAGAGGTGAACGAATGAATAAAAGCGAAATCGTCTCG 395736 26 100.0 38 .......................... AAGGAAATATGGCTATGTCGTTACCTCTGAACGTCTCG 395800 26 100.0 40 .......................... TCGTATGTTTTCATCGTTCACCTCCTAGGCTGATGTCTCG 395866 26 100.0 40 .......................... TTACCTCGCCTGATGATCTGCAAAAGCTCTGTTTGTCTCG 395932 26 100.0 40 .......................... GTTATTAAGCATGCCTATGACTTTGATTTTACGGGTCTCG 395998 26 100.0 39 .......................... TGAACAGCCAAGAAGCCCATCTCACGCTCAAAGGTCTCG 396063 26 100.0 39 .......................... ATTTTTACCTCCACGAAATGCTTAAATATTATTGTCTCG 396128 26 100.0 39 .......................... AAGCTCCTTAATTTTTTTAAACGTATCTTCCGTGTCTCG 396193 26 100.0 40 .......................... GGCAAAAGTCTCTTGGGTAACTGTCGGATTTTGTGTCTCG 396259 26 100.0 39 .......................... TTTGTCGGTGCAGTTTCAAAGGTGTTTAACCCCGTCTCG 396324 26 100.0 40 .......................... AATTAATTTGATATTATTAACCAAAACAACAAAGGTCTCG 396390 26 100.0 41 .......................... TCCTTGTATTTATTTAAAATTTGACAATAATGATTGTCTCG 396457 26 100.0 39 .......................... CATTAAAACAACCGCATCTGCAAGGATTGCTTCGTCTCG 396522 26 100.0 39 .......................... GAAGTTGAAATTGTCGAAAGGTACTTGAATCTCGTCTCG 396587 26 76.9 41 ..TTTC.T.......C.......... GATTGCTTTTGGAGTAAAACCGATCGGCTTAGCTTGTCTCG 396654 26 80.8 0 ..TTTC.T.................. | T [396678] ========== ====== ====== ====== ========================== ========================================= ================== 26 26 97.6 39 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGATTGGTTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTCGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TGCGATACGTGACTTTACGATGTTGCGACTCCGTCTCGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATTATATCGTATTCATCAAGCTGATTTAAGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATCATCTCAGTTAGACTGATGCTTGATAGCTCCTGAGCTCTGATTTATATAGCTGGTAGGATGTTGCTGATGGCCTAGTCAGGCATATCGTATCAAATTCAAGTTTTTTCATGTCACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAGG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1247052-1246818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSPZ010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-043 tig00000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1247051 36 100.0 30 .................................... AAGCTTGAGTGCAATAGCTGATTGATTCGT 1246985 36 100.0 30 .................................... TAAGTATTACGCATTATCAGTCTTATGATA 1246919 36 97.2 30 ........A........................... ATTTAAATGTCATTAGAAATCGTTTCAAAG 1246853 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.1 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCCAATGATGAGTGATACTGCGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTACCCACCAGAGGGGATTTATGCTTGCGATAGCTTAGGTTGCCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACTCTTACTTTTATTTTCCTACCCTACTATTGGCAGAAAAGTACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAGACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTACCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //