Array 1 297138-298545 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134442.1 Propionibacterium australiense strain NCTC13651 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 297138 36 100.0 36 .................................... GATTTCAATGGGAATGAATCAGCGGTTTTCGTACAG 297210 36 100.0 36 .................................... TCGACTCTTGGACGACATCTCCCGCCTCCGCTTGTC 297282 36 100.0 34 .................................... TCGGAGCCGGTGCGCCACTCGCGCGGCACGACAA 297352 36 100.0 37 .................................... TTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTG 297425 36 100.0 37 .................................... TTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTG 297498 36 100.0 37 .................................... CCGATTATTTTCAACTGTTTCGTCCTCGGGATGGTCT 297571 36 100.0 36 .................................... TCCAGGGCCGGCCGAGGGAGCAGGGGGTGTAACGGC 297643 36 97.2 37 ....................A............... CGAACGGGCCCGTAGGCAGCCCCAGCTGAGAGCAGTA 297716 36 100.0 36 .................................... TCCACCTACCAAGAACCCGACGAGCGCTGCAGCCGC 297788 36 100.0 38 .................................... GTCAGCATGTTGTGACTGATCATCGCAGTGACCTGCAC 297862 36 100.0 38 .................................... CATAATCGCCCTTTGCTGCCCACTGGGCATATTCGCGG 297936 36 100.0 37 .................................... CCGAGTATCCTCTTCTGCTGAGGGCAACTGGTGCACC 298009 36 100.0 36 .................................... ATCTGGAGGCCGGTCGAGGTCCAGGCCCTGCACCTG 298081 36 100.0 36 .................................... AAGAAGCGCGCCGCGTCCATAACCGCGACAACCGCC 298153 36 100.0 35 .................................... AACAGGCGGATCAACGCCTTGCCCTCGTCAATCTT 298224 36 100.0 35 .................................... AACAGGCGGATCAACGCCTTGCCCTCGTCAATCTT 298295 36 100.0 35 .................................... AAGAGGCGGATCAACGCCTTGCCCTCGTCATTCTT 298366 36 100.0 36 .................................... CCGTGTTCATCCCGACAACCTGCTTGACACCGGGGG 298438 36 100.0 36 .................................... CCGTGTTCATCCCGACAACCTGCTTGACACCGGGGG 298510 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 20 36 99.9 36 ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Left flank : GAGAGATCCCTGAGTACAAGCCCTTCGTGACGAGGTGAGGAGCATGGCGAGACGCCGCTATCTGATCGCCTATGACATAGCGAATCCGAAGAGGTTGAGGGCCGTCGTCAAGCTGATGGAGGACTTCGGCACTCGCTTGCAGTACTCGGTGTTCCTGTGCGATCTCAGGCGTGCTGAGCTCGCGGTCTGGCGTACGGCCTTGACGGACGTTGTCGAGTTGAAGGAGGACTCGGTGGTTGTCATAGACTTGGGGGCAGTGGGTGCGACCCCGATCGAGGTCATCGGTCTGGCGAGGAACCTTCCCAGCCAAGGAGCTGTCGTCGTGTGAGGCCTGCGAGAGATCCTGCCCCGCCGGTGCCCCGCGAGACCGCTCGCAGCCTTGCCAGAGGCCTGTTAGCGTTGACAAGACCATAGCGATGACCTACGATCTAGGAGTGCTGGTGGGGCCGCTCGCAATCGGGTTCGTTTCCCCTTGTCAGATGTCACAAAATCTGATAGCC # Right flank : CCATTCCGGGAGAGTTATTCAAAACCCTTGATTTGAGAGGGATCTTGGAATCTGTTCTGCTGGTATAGGCGTGTCTGAATGAACGGAGAGGGCCTGCCTGAGGTAATTGGATTACCGAATACGTCAATTACTCTCGGAGCAGGTCCACGCGTGTACCCTGCAACAGGTTTACCGGCTGAAGCAGTCACAGTCCTCTACCAGACTCTTGCCCACAATTACCCCCGCACCTCGCAGACCACTGGGTGGCCACCAGCACTGAGTCCAGCAGAAGAAATCAGGGCCACACTCGTCTACCTGCGGCGCAACCGGGCCCACGGGCGAAATTGGCCTAGTCATTCGGGGTCAGCCAGTCCTCGATCTGCCGGGCCATCAGCCGGTGGACTGCTCGTATCGTCGAGGTCCTCGCTGACCTCGTGCCCACGGAGAGGACTTGGACCATGCCCAGACACTGATCGTGGACGGCACCCTCGTGCCCTGCTGGGACTGCAAACACACCCAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 299480-299739 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134442.1 Propionibacterium australiense strain NCTC13651 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 299480 36 100.0 41 .................................... CATGATCACATCGGACAACCAGCGGACGGAATCCGTGGCCT 299557 36 100.0 37 .................................... TAGCCGATTTCGCGGAAATAGTAATGCTGGACGATGC 299630 36 100.0 38 .................................... TACTGCGGCGCCACACGGAACAGCGACAGCTGACTGAG 299704 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 4 36 100.0 39 ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Left flank : CCATGCCCAGACACTGATCGTGGACGGCACCCTCGTGCCCTGCTGGGACTGCAAACACACCCAGGGCCCGTACTCGGGCAAGCACCACACCCCCGGACTGAACCTCCATATCGCCAGCACCCTGACTGGAAAACTCATATGGGTCGGATCGACCCACGACACAAAGGCTCTACAACTGATCGGTTTTCTTGACATTTTCCCGGACACTCCGCCATTGGGTGACAAGGGCTACATCGGGCTGGGTATGACAACCCCGATACGCGAACAACCAAGGGGCGGGCTCACAGGCTGGCAGAAAGAATACAGCAAAACCATCAATTCGCTACGCGCCCCGGTCGAACGAGCAATCGCCCAAGTGAAGACCTGGCGGACACTCCACACCGGCTACCGCAGACCCCTACACACCTTCCCGCAAACCATCACAGCAGCCACAGCACTAGAATTCTGCAAAACAGTTTTGAATAACCCTCCGGGTGCGGTGACCAGGGCGGCCACGTCGA # Right flank : CACGGGTCGAACCCGACTCGTGCCACTTTAGTGTGGGGGCCAGGTGAGGCCGAGGGTGTCGAGGATGGTTTGGGCTGCGGGTGTGATCTGGTCGTGAGCGTGGAGGGTTTGGCCAGCGATGTTGACGTTCATTTCATGGATTGGCTCGAGTGTTTCGATGATTTTGGCGACGGATTTCCCGGTGATTGTTTGCAGGCGGTGTGAGACGGCGAGTGCGGCCATCACGATGGTGAGGTGGGCTTCGATCGCCTCGCGGGTGTGATGGAAGATCGGGCGGGCTTTCAGGTCGCTCTTCGACATCCTGAAGGATTTCTCGATTAGCCAGAGCTCGTGATAGTCGGCAATGAGTTCTGCCGCGGAGATTCGGGTGGCGGGCATGTTCGTGACGTAGCCTTTCAGTCCGACCAGTCGATGAGCCCGATCGAGAGCTTTCTCATCGAGGATTTTCTTGCCTTGTAGGGTTTTCACGAACCGCGGACTCTTGACTGTCTTGGTGCCGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 301438-301768 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134442.1 Propionibacterium australiense strain NCTC13651 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 301438 35 100.0 38 ................................... ACGGGTCGAAGCCTCTTGCCTGGTTCTCTCCCACAGGA 301511 35 100.0 40 ................................... TTCTTCCCAGTACTCAGGGTTTCCGAGCAGGTCCTCCAGA 301586 35 100.0 40 ................................... TACTCATATGAGCCAACGGCGAACCAGAGCCTCCGCCAGA 301661 35 100.0 38 ................................... CGCGGCATCTGAGATCAGGGTGACCAGCTCAGGATCAA 301734 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 5 35 100.0 39 TTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Left flank : GCGGGATCCCCAAGGAGTCGAGCTCGCGGATGCTACCGGCCTTCGAGGTCGGCTTGATCACCCGCGCCAACACCAGCTGGGCGAACACGTCATCTGCGAGAACCTCGAAACCAAGATCGGTATAGACACGGCGCAGGCTGTCCCATAACGCGGTCGAACGCTTGTCAGTGATGGTCAACGACCTCGAGGCCGCAGCCGGTGACAGAAAGTCCAGCTCGTCCTGCAACGGCGCAAGCTTCCGTCTCGCCGCGACGACAAGGGCAGACAGTTCCTCAGGGGTGTGAGCCGACCCGAGATGCTCCAACACCCGGTCACGCCCATCCCGATACTCCGCGATCTGGACAGCCGTCGCACCCGAAGCCGTTCTCACCTTCCGAACGTACGCCACACCACCCCTCCAACAACCCGATTAGTGTGTGAACCACACTAACCAACCCCGCTCTCACCAGGCAAAACACCCACAAACACCCACCAACCAACCAAAAGTGGCACGAGTCAGG # Right flank : CACCTGGTGCTCGGCCATGAATCATTTCTTTTCCCATCTATGGCCGTCATGAAACAAAACCGTATTCTTGATGGATTTCTGGTCTTGTTTTCGGATATGATTGGGGCATGCAGGTTGAGGTCACCCCGGAAGAAACCGCTGTTCTAATCAGGTGGAAGAAACGCACAGACAATTACATGCTGGTGCGGATGAAAGCCGAAGCCATCCTGTACGCCTCCGAAGGAGTCGGGCTGGGAATCATCGCGAAAATGGTCGAGCGCAGCGAGAAAACTGTTCGGGAGTGGCTTTCCGGCTGGCAGTCCAGCAGGATGTGCTCGGTACTCACCGGGCACGCGGGGAACCAGAACGCGGCGAAACTCACCCGCACCCAGAAAGAAGACCTCAAGACGGTTCTGGCCCAGCCGCCTTCCCGGTCCGGTATCGACGCAGAGTTCTGGGATGTTCCGGCCCTGCGTGACGTGGTGAAGATCTTGTTCGATGTGGAGTACGAGTCAGAGTCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 2036543-2033787 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134442.1 Propionibacterium australiense strain NCTC13651 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================================================== ================== 2036542 36 91.7 36 .......................C.........A.T GAGCATACTCCACCCATAATCATGGGCTTTGCCTAT 2036470 36 75.0 158 A.............T.A..T.G.T....A.....CT AGCTGCAGGGCGGGTCCCAGCTGCTGGGAAATCGGATCTTAACGGAGCCTCACCTTTATGAAAGAGGATGCTAGCACGAGTTCTCAGCACCCGCAACCTTGCGTCCCCAATCTCAATAGGGCTCGATCGTCGGGTCATCGTGCACCATGCATACTACC 2036276 36 97.2 36 T................................... AACGATCAACACGGAGGAGGGCAACGCGTACGGCTG 2036204 36 100.0 38 .................................... GCCGCAGGTGACAGTGATCCTGTCTTCCGTCATGGCGT 2036130 36 100.0 39 .................................... CCAGACGGCGACCCAGATGGGCTACAACGAGGAGGAAGC 2036055 36 100.0 36 .................................... GCCCGGCGACCCGCTGTCGCAGGCGTACGAGCTGTG 2035983 36 100.0 36 .................................... CGAGATCGAGGTCATCGACGGGGACCGCCGCACCAA 2035911 36 100.0 36 .................................... GCCCTGCAATGTGACAGAGTCCTTGCCGATATCGAG 2035839 36 100.0 36 .................................... CTCACCATCCCCGATGAGAACGACTGGGATGGTATT 2035767 36 100.0 35 .................................... TCAAGTAATCAAGTAATGGAGCACAACCATGACCA 2035696 36 100.0 38 .................................... GCCAGGGCGACCCACTTGGCCCAGCCCATGATCGTGAC 2035622 36 100.0 35 .................................... TCACCGAATTGTCCTGCGGACACAACAAGCGAAGG 2035551 36 100.0 37 .................................... AGCGGGCCGGTAAGCTCTCCGGCTACCTGATCTACAA 2035478 36 100.0 35 .................................... GTCTAGCCGCTCAGAAGCAGGCTGTCAAGTGACTC 2035407 36 100.0 35 .................................... CCGGGCTGGTCACCGACTGGCTCGAAGGAATGAAC 2035336 36 100.0 36 .................................... CTCTCCTGCGCCTCACAGAAGACGGTTGGGTAACCC 2035264 36 100.0 36 .................................... GCTCAACAAGCGGCAATGCCTCGCGTTGAGCGAGCT 2035192 36 100.0 36 .................................... GTGGTTGACGGCCATCTATTACTTCGTCCGCCACAT 2035120 36 100.0 35 .................................... TGGGCCGCCGAACAGTCCGCCTCCTACGCGGTCGA 2035049 36 100.0 35 .................................... GCCAGCGGCGGCGCCACCGGCAGCGGAACCACCAT 2034978 36 100.0 35 .................................... GCGCCGGATGCCGTTGTTGTAGACGGTGTTGATGA 2034907 36 100.0 35 .................................... CGGAGCGGGCTGATGCTGCGGGGTAGGGGGACGGT 2034836 36 100.0 36 .................................... TCCCGATCACGATCGACGCCTCACGGCCTAGCTCGT 2034764 36 100.0 35 .................................... TACTGCCCGGGCCGCATCACCGTGGGCGTCCAAAT 2034693 36 100.0 35 .................................... CTGTTCGGTGAACGCGGCCTGCCGCCCACCGGCAT 2034622 36 100.0 37 .................................... CCGCAGACGAGATCGAAGACTTGATCGCGGACCTGGA 2034549 36 100.0 37 .................................... CGCCACAGGTCAGGGCACACTGCGAAACCTCTATGGT 2034476 36 100.0 36 .................................... CAGCCCCTCCAGCGGGTGCTGCGGGTAGTAGCGGGC 2034404 36 100.0 37 .................................... GTCGCATCGTGTGCTTCAATCTCCTTCACGAGGTCAG 2034331 36 100.0 37 .................................... CACCCTCACCGGAGGGAGACCGCCCGAGAGTGGTTGA 2034258 36 100.0 36 .................................... ACAGCTCCGTTCGCCTGCCGGGGATTCTTCGATGAA 2034186 36 97.2 37 ...........................T........ CGGATGGTGGGGCGCCGGCCGTGCGGCCAGGCATGAG 2034113 36 100.0 35 .................................... ACGTCGGCGGTGGTCACCCCGAGCTGCTTGGACAG 2034042 36 100.0 39 .................................... GGACACCGGAAGGCTCGTCGCGCCGGCGAACTCGGCAGA 2033967 36 100.0 36 .................................... TTGGCACCCTGGTGAGGGGGAGAGTTCTGTCACTCT 2033895 36 100.0 37 .................................... GCCCAAGCCTCCTCGGAGGCGTTGTACTCGAGGCCGA 2033822 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================================================================================================== ================== 37 36 98.9 40 GCCTCAATGGAGCCCGGTCCTTAGGACCGGGAATAC # Left flank : GCTTCTGCGGTTCTGCGGGTTGAGTTTCAAGCTGCCGGACCCGTTCGACAAGCACCGCGACGAGCAGGCCATCACCCGGCGAATGGCCGTGGTGAAGGCCCAGGTCAATGACCTGTTGGGCGCTGGCTGTGAGGTGTATGCGGTCGACGAGGTGCGTTTGGAGCACGAGGCCGAGACCCGCCGCATGTGGCTGCCCAAGGGTCAGCGCACCAAGTTCTACCGTCTGCGCCGCTGCCTGGCCATCGTATCCGCGGCCACGCACCGGTACCGGCCCTGGTCACTGCTGCGTTTCACTTCCCGTGACACCACCGACACATCCCGACCGATCCGCCGAGCGATCTCCCGGAACGAACAGCCCTCATCGAGCCCCTTTGCGATCGCGGCCCGATCAACAACGGTCAACACCCGGCGCCCCGCACCAACACCCCCGGCAAGCACTGTTGTTACGACCCCATGGCACCACCCCCGAGCAGCCACCAGTTCCGCACCTGCCCCTGAAT # Right flank : GGCTCGCCAGTTACGAGGCTGCTGACTACCAGTGTTGCATACTTTTGCGAGCGCTGCCACTCGGCGCCTCGTTGGACAGCGGGAAGCACTGCATGAACTGGCCAGAAACCGGTCCTGGCTAGGGTGCGAGCACTGTCGAAGGGGCTGGTCGGTATCAGAGCGCTCGCTAGACAATCTGGGGCCCTCGTGTGGGAAGCAGCCTGCGGTGACCCACGAACGTGAACCGGTCTCCACTGGGGTCGCCCAAATCAACGATCACCACTGAGTCTACAGCCAAGTCCATGATATCCTCACTGTCCGCTTGTAAATGGATGAGTTCTGTCCTAGTTAAGTCGCAGACGAAAACGGAATACTGAAGACGTTCCCCGTTGGCCTCCATCAGCTTGCAGATTCGACGAAGTCGCGTCTGGTTACGAATGTCATAGGCTATCAGATATCTTCTCCTTCTCGTTTTCATCTGGTCATCATCGCCGTGTACTGGTCGAGTTCTCCGATCATGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAGCCCGGTCCTTAGGACCGGGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.30,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 5 2954159-2953113 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134442.1 Propionibacterium australiense strain NCTC13651 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2954158 36 100.0 35 .................................... TGCGACGAAGTGCCCGGCCTGCTGCTGCCCGTCAC 2954087 36 100.0 37 .................................... CTTTCCCCCGCGAATCCATCGGCCAGGTGCCCCGGAA 2954014 36 100.0 38 .................................... GCGCCCACATCTACGGCCACTGGGGCAACGCATCCCAA 2953940 36 100.0 38 .................................... CGCGACGTCCTCGACCAGGGCGCCCCCCTGTGCGGCAT 2953866 36 100.0 38 .................................... CTGTTGGTGATGAACTTCGCCCAGCTCCAATGGCTGAC 2953792 36 100.0 35 .................................... AAGGAGGTTGAAGCACACGACGCGACCCTATACCG 2953721 36 100.0 37 .................................... GTCGTGCCGTCAGGGACGGCGCGGACAAGGTGTGCAG 2953648 36 100.0 35 .................................... GTGTTGCAAACGTCGGCTTCGGAGGACACCGACGT 2953577 36 100.0 37 .................................... TTGACATCCGCGAGGCGATGGAGCGTATCCAGACGCT 2953504 36 100.0 36 .................................... GATTCACCGTCCCTCCAACTCGTCGGAGATGTACAT 2953432 36 100.0 35 .................................... GTGCTCGCGCAGCTGCGCGTAGCCACGATCAGGGA 2953361 36 100.0 35 .................................... ACACGATCACCGGGCTCCTGACAAGCGCCGGAATG 2953290 36 100.0 35 .................................... CTGACTTGCTGAGAATCTAGGCTACTGCGTGGTAG 2953219 36 100.0 35 .................................... GCAGACGCCGAAACTTATCGCATCTCCTTCGACAT 2953148 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 15 36 100.0 36 GCCTCAATGGAGCCCCACCTATTCAGGTGGGGAAAC # Left flank : GGACAACGCACCAAACTGTACGTGGACCGGCAGAAAGTGTCCCAGTCGTTCTTCGGCGCCCTCTCGCTTACTGACAAGAAAGTGCGGCTGTATCCGATCGAGGGGAACCAGAACACCGAACAGATCATCCTGGCTCTGGAACGGCTCCAGCGCGAAACCAAGGCCGACCGTATCGCTGTCGTACTGGACAATGCCCGGTTCCACCACGCCAAAGCCCTGACCAGCCTCTACCAGCCCGGCCAGTTGCTGGAGCGCATCACACCCGTTTTCTTGCCGCCGTACGCTCCCGACCACAACCCGGTCGAACACGTCTGGGGCACCGCCAAAAACAATATCGCGAACATCCAGCACCAGACCCCCGAACAAACCTTCGGAGCATTCGCCTCGTACATCACCGGACGCACCTTCGACTACGACTTCGAACACCTCCCCAAACCCCAACCAGAAACCGATCTTGTTTCATGACGGCCATACATGTTCGATTCCGTACCGGATTATAT # Right flank : GGCTGCCAGATTTTGTAGGGGCTGACAAGCGGCGATGCTTCGTGTTGCGAGTGCTCCTCCGTTCTTGTCAGGATCGTAAGGCGTCTCTATGGTCTTGTCAACATGAACATGGCTCTGACAAGGGTGCGAGCGCTCACGCGGGGCGGCGGCGGGACACCAGCTCTCGCACCGGCCCCCACGTCGACATCATCCTACATGGAGATGGCTTCTCGATGCGGTCCCATGGCCGTCACGCTCTCCTGAGCCGGGTCAACGGCAACTACTGCTTCTCTCCTCATCGAAGGAAACCAGTCCGCGGCGAGCACCACCTCTGGCGCCATGCACTGAACATGTCAATGGTTTCGTCGGGCGGTGGGGAGTATCGAGACGGTAGTGGACGGCAACTGTCCATCAGCGGGCTGTTGCTGATGTCATCGCCGCCTCGTCCGGGAATGTTTCATCGGTTCGCGAGTTCGTGTGGGATTCTCGGCGCTCTGGTCTAGGAAGGGCGCACCCGGATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAGCCCCACCTATTCAGGTGGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 6 2955338-2956535 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134442.1 Propionibacterium australiense strain NCTC13651 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2955338 36 100.0 35 .................................... CCGGTGAGGGTGGGGGTGATTATGGTGCGGGCATG 2955409 36 100.0 36 .................................... GCGACGATCACCTCCACACCCCCTCGTGGGTGGCCT 2955481 36 100.0 36 .................................... TTGGTAGCTGAGACCAAGATCATCCCTCAAAGAGTC 2955553 36 100.0 37 .................................... TTGCTCGCAATGGTGTTGTTGACCAGCTCGTAGAGCC 2955626 36 100.0 37 .................................... TTCTTTCTTCTGGTTGTTGACGTCGTCGACGACCCAC 2955699 36 100.0 36 .................................... CCACGCGCTGATGCTCTCAGCAAGCGCCTCGCCCAG 2955771 36 100.0 37 .................................... GAGCACTCTGACCTGCTGTCCCGCGAGGGCTGGGCGC 2955844 36 100.0 37 .................................... CATCTTCCAGGACGTGTACGAGTGGGCCGGTGAAGAG 2955917 36 100.0 37 .................................... CCGGTGACGTGACTGCCCCGGACGCAAATGATGCATG 2955990 36 100.0 36 .................................... GTGGACAAGGTGAAGGAGTGCGGCACGGTCCCGGAT 2956062 36 100.0 36 .................................... ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC 2956134 36 100.0 36 .................................... ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC 2956206 36 97.2 37 ........................T........... GAGGCGCTCCTCGGTGACATGTGAGCGTCCGTGCCGT 2956279 36 100.0 34 .................................... GTTGACCGCGGCGGCTAAGACCGCGCAGTGGCGG 2956349 36 100.0 42 .................................... TTCAGCTGTGTCACCACGGCTGTATACCGATCTGATGTACAG 2956427 36 100.0 38 .................................... TTGCTGATCGCAACGTGCGTGTGCAGGTCGGGGTCACC 2956501 35 94.4 0 ..........................-T........ | ========== ====== ====== ====== ==================================== ========================================== ================== 17 36 99.5 37 GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC # Left flank : GCCCGCAGAACCGCAGGAGCAGCTGATACGAAGATTCTGACTCGTACTCCACGTCGAACAGAATCTTCACTACGTCTCGTAGGGCCGGCACGTCCCAGAACTCGGCGTCGATCCCGGACCGAGACGGCGGCAGGGCCAGGACTGTCTTGAGGTCTTCCTTCTGGGTGCGGGTGAGTTTCGCGGCGTTCTGGTTCCCCGCGTGCCCGGTCAGCACCGAACACATCCTGCTGGCCTGCCACTCGGCCAGCCATTCTCGAACGGTTTTCTCGCTGCGCTCAACCATTTCAGCGATAATCCCCACATCGACACCACGAGAGGCATACAAGATGGCTTCGGCTTTCATCCGCACAAGTACGTAAGTGTCTGTGCGTTTCTTCCATCTGATCAGGACAGCGGTTTCTTCCGGGGTGACCTCGATCTGCATGTCTCAATCATATCCGAAACAAGACCCCGAATCCATCAAAAATACGATTTCGTTTCATGACGGCCATAGCACGACA # Right flank : CGTGCAACTCACGGCCAAGAAGATCGAGAGCCCGGAGGGTTTCCCCTGGGTCTCCGTGACGCTGCGCCCATTGCGGACAGCGCCGTGGCTGATCTGGTCAGTGTCACTCCCCCCTGGGAGACGGTCATCGTGCCGATCACGCCGGAGTCTTCCAGCCTCCGGGCGGCAGCGCCACCTCGCAGAGTCACCACATACCATCCGCACCGTGCCGCCTGACCCCGGGGCGAGCACTCGCGTCAGGGCATCGAAGGCCAAGGATGAAGAGGGGCCGCGGAACGATCGTTCCGCGGCCCCTCTTCCGGTTCTGCTCAGCCCTGGTGGGCCTTGCGGGCCGACCAGGCCGAGGCGACCATGTCGTCCAGGCTGTTGCGCATCTTCCAGTCGATGTCGCGGGCCGCGAGTTCACCGCGGGCGACGATGCGGGCCGGGTCGCCGGGGCGCCGGGGCGCGATCTCCGGGGTGAAGTCGATGCCGGTGACGCGGGCGATGGCCTCCATGAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 3044209-3043188 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134442.1 Propionibacterium australiense strain NCTC13651 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3044208 29 100.0 33 ............................. TATCCACACTAGCATCAACCTTACCGTGCAGCC 3044146 29 100.0 33 ............................. TGCCTGTCAAGGATGCGGAAAACTTCTTTGTCG 3044084 29 100.0 33 ............................. TCGCCTTCCGGCAGCGCCGGCACATGAGCCATA 3044022 29 100.0 33 ............................. TTAATATCGCCCCTCCATGAGGGCTTGTCCTCG 3043960 29 100.0 33 ............................. CCGTGTCAATCACAAACCCATTGCTGCCAGCAA 3043898 29 100.0 33 ............................. CGCGGCGAAGGTCTTGCCGGTGAGGCCGAGCGC 3043836 29 100.0 33 ............................. TTCACGAAGTCATCCTCGCTAAGAATATTAAGG 3043774 29 100.0 33 ............................. AGCCAGTGGCACTGTGTTCAGCTACCAAGGAGC 3043712 29 100.0 33 ............................. GATAACCCTTGCAACGGGACACCCCCGCACGAG 3043650 29 100.0 33 ............................. TGGGTCTGCAGGTGGCTCGCGGCGGTGATTATG 3043588 29 100.0 33 ............................. TTTCACGAGGTTCAGCCTCGCCACCCGCCTACA 3043526 29 100.0 33 ............................. CGAAGTCTGGTGGCCTTGAGTATGCGCTGCAAT 3043464 29 100.0 33 ............................. TTTGGCCGCGGTTTTGGCGTGGTTTGACGCGTC 3043402 29 100.0 33 ............................. TTTGGCCGCGGTTTTGGCGTGGTTTGACGCGTC 3043340 29 100.0 33 ............................. TCCTTTTTGTGGCCTATTTCCATGCCGGCGATC 3043278 29 100.0 33 ............................. CACGGCGGCGGCCAGCGACAAGACGGCGCTCAG 3043216 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 33 GAATTCCCCGCGCCACGCGGGGGTGAGCC # Left flank : CCCAATTATCTCTGTGGCAGGCCCTCACCTTTTATCATGACACGCCCATACTGGTGAAATAGCCTCCAAGATCACCCCTCAAACCAAGAGTTTTGAATAACCCTCCCGGTATCGGGCACGGT # Right flank : CAGCTGGTAGCAGCTGTGGAGGCTGAGGCGGCCTTTCCCGTGAAGCCTGCGTCGAGGCCACGAGTAACGTGAGAATACCGGTTGCTTGACGCTCACCCGAGCGACTGTATACCATCGTGACAGATGGGGACACCTCGACAGCGTCGGGGCGGAGTTCCACATCTTTTCTTCGGGAACCATGGTTCCTATCGGATTCGTGCGCGTTCAGTTGTGTCCGCGCCTGGGTGGGTCAGCCCTCTGTGCCGGGCTCATCTGGTTCTACCGCCTCTGTGGTGACCTCCAGCAGATCGCCGACGTCGCAGCCCAACGCCTCGCAGATGGCCACGAGCGTTGAGAATCGAATGGCCTTCGCCCGGTTGTTCTTCAGCACCGAGAGGTTCACGACGGTGATGCCGACCTGTTCGGAGAGCTCCACGAGCGTCATGCCTCGTGCCTCCAGGAGCAGGTCCAGGTGACAGACGACGTGTGGGTCGGGTGACGGTGCGGCGCTCACAGTGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTCCCCGCGCCACGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.40,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //