Array 1 7060-7326 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAB02000033.1 Photorhabdus luminescens NBAII H75HRPL105 Chromous1_raw_trimmed_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7060 28 100.0 32 ............................ GCATCTAAACGCAGCAATGCACTCTTAACTGT 7120 28 100.0 32 ............................ AATCAAGTTGATAATATGTATGCTGCGCTGGT 7180 28 100.0 32 ............................ AGTGAATGGAAAGTTAGTGCCATTCATGACAG 7240 28 100.0 32 ............................ CGGAAGTGCCGAAGTGAAAATGTTGACTTGTG 7300 27 89.3 0 ....................T...-..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTGAACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTTCTGAATGGTCAATGATAGTCGGTAATACTTATTTTTTCGATAACAGTTATTGGTGAACGGTTATCAATGTTTTATAGGGATTTTCCCTGGCAGGAAAATATCTCATGTCATCATATATAACGATGGATTTGATATTGAAAAGTCAGGCCGATATGAAGGATATATTATTACAGAGGAGCATCTGTATAAGGTAAAATTCAGATCTTACAGCCGTTATTACCTTGTATCACCGGATGGGAAGAAATCGATTCCGCTGAGTGATGAATGGGATAAGATGGAAGATTTCTTGAAACGTAGTCGCTAGCTAAGAAAATTGCGTCAATGGTAACTTAAAAACTTGCGCATTCCCGAACCTAATTTTTAACCCTTTTTTAGCAGTCAATCGTAACTTATTGATTCTGAATTAAATGTTATCTCTTTTGTAAAAAAGGGTCTTTTGGGCTTTTTATAAATATATTCTTTGATAGTCAGTGGGTTGGAGTTAATATGTAACA # Right flank : TTCTTGAAGTTCTAGGTGTAGTTTAGAGTTATAAAAGCAAGGAATTTCTATCGAGTGATAAGACTGGAAATATTGGCTTCATATTGAGATTGGTAAATACTCTACCTCAAGGGGGAGGTAGAGTATAAATGGGTTTGAGTTTTAATTGAGGCGTTTCACGTTTTACATGAAGCGACGTAAGCTTTATCAGATTAAATTTCCCTATAATCCAATTTTTCGAATGAATTTATAGCGCTATTTTTCGATAGATTATAAATTTTAACTCCTCTGTTTATTGCTATTTCATGAGCTAGGTTGAAACAAGGAATGATGAAATCGTGTAAGTTATTATTTAATTTGGTATCGAGTTTGTCATTTTGAGTTTCATAGAATCTTGGTTTTGAAAAATTGTTCATATCTAAACCTGCGAAATATATTTTTTTGTAGCCCAAAAACAATGCTATTTGCAGAGCGGAATATGCAACTGTTGTTCCGTTATAAAATCCAAGATTTAAGTTCAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10430-10578 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAB02000002.1 Photorhabdus luminescens NBAII H75HRPL105 Chromous1_raw_trimmed_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10430 28 100.0 33 ............................ GTTTGTATCAGCAAACACTCTGCTGGATTTAAA 10491 28 100.0 32 ............................ ACTGGGCAATCGCCCGGTATGGGTTGGCTATG 10551 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 3 28 94.0 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCATTGAATGACTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGATTATACTGAGGTGATTGATATCCAACCAATCCCTCAAGAAACTAAATACCGTTGTGTCAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAAGAACAACGTACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCCGTTATTTGTCGAACAAGGGTCAATACAAGACAAACCAATACCGGGAGTTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGAGATTAGCCGCTGCTAATAAAAAGGTTTTTTTCTGCTTTTTATCATAATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTGACA # Right flank : CTCAGTTAAGTGCGCTAAAAAAGGTGATATTCTTACATTCCTTAATTCTTATGCTTCTGAGCATATTCTTCACTGTTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCACTTACGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATGACCACATCCTTGTTGTAAACAGCCATTGATTCATCTAGTTCACGGTCATCGGTATAGACGCGTTGCATGCAGAACCCTTGAGATGGGTTCAAACGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCATCGGTAAAGACTTCAACCACCAATAAGCTATCAGCAGGTTTGTTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTTCCACGTAGTTCCGCATCAATATCCAGTGG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16205-15998 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZAB02000139.1 Photorhabdus luminescens NBAII H75HRPL105 Chromous1_raw_trimmed_contig_139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16204 28 100.0 32 ............................ AGCATAAACTACATAATTCATCATCTGTGAAT 16144 28 100.0 32 ............................ TCAATTATTTTACTGAAATAAACTGAAGCATT 16084 28 100.0 32 ............................ CGACAATCACTATGCTGATGCTATTGAACCGG 16024 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAGAGGAAGCAGGTCTGGAAGTTGTTATGGATCGCTGCCCGAAAATTGAAATTCCGAGATTGGGACTCGAAAAATAATATTTTTCAGTTTGTAGTTACTTAGTTTCTAATCAATGGACGAAGGGAGCCTGGCACCAATATCTAATACAAACTTAAGGCGTTGGATGAGAAATGGTGCCCGGGTTCCAAGTGTTCAAATAATGTTTAAGTTGAATATTGAGTTTACTGTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGCAATTTTGGTTGTTCTTATGGTTGCTAAGTTTTGCCAGAATCTACACTTTTATTGCTATAAGATAGGTGTTTTTGCTGTACCCCAGTTTTAACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAGTATTTCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGAGATTAATTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGTGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //