Array 1 5988-3860 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYTC01000097.1 Acinetobacter junii strain AMA32 AMA32_NODE_97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5987 28 100.0 32 ............................ CATAGCAATCAACTTGCATGGTGCCTTGAATC 5927 28 100.0 32 ............................ ATATCGGCTCAATTACACTAAAACCCTCTAAG 5867 28 100.0 32 ............................ AACTATCATCTTTTTTGCTGTTGGTCTGGCTT 5807 28 100.0 32 ............................ ATTTAGCCATCTGTCACAAACTATAATCCCTC 5747 28 100.0 32 ............................ TTAAAGTTGACTTCGAACAAGAATCAGGCTTT 5687 28 100.0 32 ............................ TCATTAACTCGTGATTATTATAGCAATGAAAG 5627 28 100.0 32 ............................ TTAAAAAACTGGTTGACGATGAAGTTCAATGC 5567 28 100.0 32 ............................ GTAATACTCCTAGAGTGTCTTTGATGCTCTAG 5507 28 100.0 32 ............................ TATAAACGCCTTTAAATGATCACCGCAAGGGT 5447 28 100.0 32 ............................ TTTTCAAAATATTAGATTTGCTCTGAGCACTG 5387 28 100.0 32 ............................ ATGCTGTTGAGCTTCTTAGTATGCTGCCGGCC 5327 28 100.0 32 ............................ ATTTACCAGAAGCCATAAAGTGCGAGTTACGC 5267 28 100.0 32 ............................ GTATGAAGTAGAAACAGCCCCTACCCGTATGG 5207 28 100.0 32 ............................ AATGAAAGCGAAAGGTCAATGTCTTGATTGGA 5147 28 100.0 32 ............................ TCTTGAGTATCTGAAATTTGGCGAATACGTGC 5087 28 100.0 32 ............................ TGTTCTCATGAGATCAATATTACATTTCATAA 5027 28 100.0 32 ............................ GGTATGCAGTCGCAAAACCCTGAAATTAATAA 4967 28 100.0 32 ............................ GTCTGAAAAGATGATCGATTATCACTGGAAAC 4907 28 100.0 32 ............................ TGATCGTCATGTTTTGCATTTGGAAAGTTTCT 4847 28 100.0 32 ............................ TTATCTCAAGAATGTTTTTAGAACTAATATTC 4787 28 100.0 32 ............................ GATGCTTCTACTTGGAGTGTAATTTGCGGAGC 4727 28 100.0 32 ............................ AAATAAGGAAATAAAAAAGCCCGCATATAAAT 4667 28 100.0 32 ............................ GTATCGTCCTGAATTAAATGCATCTAAATCAG 4607 28 100.0 32 ............................ GCGTATTGCAGCCGAGCAACAACGTGATACAG 4547 28 100.0 32 ............................ AAGTTCATGACGCATTACTCCTCTTGAATTTC 4487 28 100.0 32 ............................ AAATGAAGCAAATCCCGAAGCTACTGACCTAT 4427 28 100.0 32 ............................ AAAATGGGCTTACTACAAAACTGGCAAACAAC 4367 28 100.0 32 ............................ ATCAATCCGCAAAACAGGTAAATACGAAGCAC 4307 28 100.0 32 ............................ TGTTGCGTGATTCTCACCCACGTTCTTAGCAA 4247 28 100.0 32 ............................ ATTTACTTTGAACCCGATGCACAAGACAAATT 4187 28 100.0 32 ............................ ATGTTGCCACCGTTAAAATAATTACTGGAGTC 4127 28 100.0 32 ............................ TAAGACATGGACAAAAGAAACTGAATTAGCAA 4067 28 100.0 32 ............................ AACCATTTGATCAAGGGGTATTTTATCCATGA 4007 28 100.0 32 ............................ TCAAGTTTTAATGATCTTGAGGGCTTTTAAGG 3947 28 100.0 32 ............................ CAGCATAACTACCAGTCGCCTTTGGAAGCAGC 3887 28 92.9 0 .......................T...G | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.8 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : TTCAGGGGTATATTTTAATTTTGTCATCGGGATAGTCTCTCAGAATATTAACTCTCCGACAAACCCGGTACGGTTCATAGGCAGCTTAGAAAACCACCATATCAAGAAGAAGATTTGATTAGC # Right flank : TATTATCTTCAGTAATACTTATGCAAACGAGAGTTTCTGTAAATAATTTTTGTAATAAAAAAGCCAATTATCTCAGTAAGATAATTGGCTTAAGCAAAGAGTTTGGCTATCCGCTTATTCTTCGATCATCCCAATAACACGGCACTACAATCAAATTATTTTCATGTAACCGAGACCATAATCTTACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGCAGGGTAGATTTCATATTGTCATAACGACTATACAAAACCTTATGCACCATCTCCAGGCGTTTTTTATGCCGGTCATGCAGGCCATATTCATCTATGACCAATAAATCAAAACTAGAGAAATGGTCGATAACTTCCTTCTCAGAACGTGAAGCATCTGACCAGGTGTCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGCGCAGATTTTGTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32538-36649 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYTC01000028.1 Acinetobacter junii strain AMA32 AMA32_NODE_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32538 28 100.0 32 ............................ TGATATTCCTCTTTTGAAATTACTATAAAGCA 32598 28 100.0 32 ............................ TGCTACAAAAACAAATCATGCACAAGGATATG 32658 28 100.0 32 ............................ GCTATTTCTAACAGTAGCATTAAGCTTTACAT 32718 28 100.0 32 ............................ AACTGAAGAAAAACATAGGTAAGACTAAAATA 32778 28 100.0 32 ............................ CATCTAAAAAATGGATATTTACTTTTAACAAT 32838 28 100.0 32 ............................ TAGGGTCAATAAGTGACACCGGATTAATAGGG 32898 28 100.0 32 ............................ AACATTCTCATGCTTAAGTTTAATGATCTAAA 32958 28 100.0 32 ............................ ATGTGCATATGCTTGTTTGCGAGGCAAAGCGA 33018 28 100.0 32 ............................ AATATAATGTTCAATTATCAACGTATGCTGCT 33078 28 100.0 32 ............................ GATTATTTTTCTAAACGTAAGCAGAGTGATAA 33138 28 100.0 32 ............................ TAATTAAACGTGGTGGAAATATATTTATCTTT 33198 28 100.0 32 ............................ GTTTACCTGAGCTAAAATCCACTGCAAAAAGT 33258 28 100.0 32 ............................ ATTGATAAGAGTGTTAGGGGTGGGGTTGTTAT 33318 28 100.0 32 ............................ TTCTTTCATCCACGCATCACGAATAGCTCTGT 33378 28 100.0 32 ............................ TGAATATTTAACTGCAAAACCAGTAAAACATA 33438 28 100.0 32 ............................ TTTGAATTGATCTTTAGCTACAGTATTAATAT 33498 28 100.0 32 ............................ ATTTATGGAAGCTTTTGCAAAGATGCCAGAGG 33558 28 100.0 32 ............................ TTTGGATATGTACCTTAAAAAACTGGTTGACG 33618 28 100.0 32 ............................ TTATTTAAACGACTTTCTACCAACTGCCCGTC 33678 28 100.0 32 ............................ TCTTTTTTTAGAGCCGCCATACCCTCAATCCT 33738 28 100.0 32 ............................ AAACCAATCACGCATTTGTTGCTCTTGTCTTG 33798 28 100.0 32 ............................ TAATTTAGATAATGACACAACAGCTAGAAGCG 33858 28 100.0 32 ............................ TTAGCGTTTGGGGCAAGCTTTAATTCGAGAAA 33918 28 100.0 32 ............................ ACACTGACGATTCACACCTGCAGCAGTTTGTG 33978 28 100.0 33 ............................ CCATGCGGATGGAATTAATACACCCTCAACAGA 34039 28 100.0 32 ............................ AGCTTTAAAACAAGCCTATGCAACCACAGATG 34099 28 100.0 32 ............................ AGTAAACATCCTGATCTTTACAAACTTGAACC 34159 28 100.0 32 ............................ ATTTTATAAAGAAATTGGTTGGTCTCTTTGTT 34219 28 100.0 32 ............................ TGTCTTTGGGAAAGCAACAAAAAAAGTGGTGA 34279 28 100.0 32 ............................ CTCTACATGCGCAGGAATATGAAGAGTTTGCA 34339 28 100.0 32 ............................ TAACGTTTCAATCAAATACTGAGGATTAAAAA 34399 28 100.0 32 ............................ AAAATCAACGTATAGCTGCAATTCAAAAGTAC 34459 28 100.0 32 ............................ AACAAAATGCAGACAATGGCGATGTGAAAGGC 34519 28 100.0 32 ............................ TGAGTCGTTGCGGTTTCAGCCTTGGTTAATGC 34579 28 100.0 32 ............................ TATTGATCGGATAGATATAACGGACTGGCTTA 34639 28 100.0 32 ............................ TGCATGTTTCAACACATCTGCTTTACTCATAT 34699 28 100.0 32 ............................ TGTAACACTACCTTTCTCCTCAAGCACCTGTA 34759 28 100.0 32 ............................ TGAGCAACCTTTAGTGCATTTTGGATTGAGAC 34819 28 100.0 32 ............................ TATGTGATAAATGTAAAAGATGGCCCTGACAC 34879 28 100.0 32 ............................ ATCCTGAATCAATATGTCTATTTCCTTAAAAC 34939 28 100.0 32 ............................ TAAATTTACTATACGTAGACTCTAAGCCTCCC 34999 28 100.0 32 ............................ TGTGGAACTTGCTTTCTAAGAGCGGTTTAAAT 35059 28 100.0 32 ............................ TGCAACTGCTGCGTTAATCGCTGATTGATCAC 35119 28 100.0 32 ............................ ATCAAATCAAAGTTTTCATGCCAAACACTTGA 35179 28 100.0 32 ............................ ATTAAAGGAATCACTTCAATCATTACTGCAAT 35239 28 100.0 32 ............................ ATCCATGCCTTTGACATCACGAAAAGAGCATT 35299 28 100.0 32 ............................ AGCACGCAACAATAAGACAATCATTCTGAAGA 35359 28 100.0 32 ............................ ATCATCTAAGACATAACCCTCTTTGGCGATAT 35419 28 100.0 32 ............................ AACTTCGGGATTATTAGTGTGATTAATTATGT 35479 28 100.0 32 ............................ AAAGCAAATGAATATCTTCTGTAATTTTTCTT 35539 28 100.0 32 ............................ TATAATTGGTATGGACCAGTGAAGGAAATTGA 35599 28 100.0 32 ............................ GATAAAAACGCCCCCAAGCGGAGGCGTTTATA 35659 28 100.0 32 ............................ TATCTGGCTCCGACTGACCCACAAGACTCTAT 35719 28 100.0 33 ............................ AGAGATTGCAGTAGCTAAACCGAAACGTTTTAC 35780 28 100.0 32 ............................ CAACTCTGTCCTTTACGACCAACAGGTAAAGC 35840 28 100.0 32 ............................ AATTAATTCACCTTCACGCCCTGCATCGCAGG 35900 28 100.0 32 ............................ ATTTAATAGATTTAAGCTCTTTGAATCTGATT 35960 28 100.0 32 ............................ TTCAATACAGCTTTGCTTATAACTCTCGCTTA 36020 28 100.0 32 ............................ CTATGGTTAGAGCATGTTGACCGCTTTGGAAA 36080 28 100.0 32 ............................ ATTCGTAGGTTGTTGTGTATTGCCTGCACTGT 36140 28 100.0 33 ............................ ATAAATGGGAAACACCTCAAGATTTTTTTGAAA 36201 28 100.0 32 ............................ ATGCACAAATCATTAGCGGCTTTGATTTAATT 36261 28 100.0 32 ............................ ATAATATTAGCTAGCGTCTCGTCTGCAATATC 36321 28 100.0 32 ............................ AATTGGAACTGGCTATTTAAGAAGATTTGGAA 36381 28 100.0 32 ............................ AACGCATCTGCGCCCATAATGCACTGGGATAT 36441 28 100.0 32 ............................ AATGGTTTCAGCCTGCATCGTGAGGATAGATA 36501 28 100.0 32 ............................ AACTGGAGATTAGAGATGGAACAATTTAGAGT 36561 28 100.0 32 ............................ TTGTGCTAAAAAATTAATATGAATGCCTAGCG 36621 28 75.0 0 .................A.C.G..CCGG | T [36637] ========== ====== ====== ====== ============================ ================================= ================== 69 28 99.6 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : CTGGACATTCGACGTTGGCTTGAGCGTTTAGAAGATTATGTACATGTCACTTCTATTCGTGAAGTACCTAATGATATTAAGAACTATGCCATTTATAAGCGTAAGCAAGTGAAAACCAATGCACAACGTTTGGCGCGTCACCGTGTAAAACGTGGGGATATTGGCTTTGATGAGGCATTAGCCAGATACAGCAATGTAGTTACGACAACCAACATGCCTTATATTGAAATGAAAAGCCTGAGCACTTCAGATCAGCAAAGTGAAAAACGTTTTAAATTGTTTATCGAAAAGCAATCTGCTGAAAAATCTGAAACTCAGGTTTTTAGCACTTATGGATTAAGTTCGGTGTCATCTGTACCAGAATTTTAACCCAATATTTTTATACTCTTTAACAGCTTAATAAAATCAATAGCTTATGATAGTGGTTTAAAACTTGGGTCTTTTGAGAGATTTAAGAGTTAAATCACTGTTATAACTTTATTTTTTGCTTTAAAATTGCT # Right flank : GTTTGTCGGAGACTTTTTTATTTAAGTTAGGCCACCTGACCTAACGGGTTAATTTTATCATAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //