Array 1 82793-82375 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSXU01000020.1 Corynebacterium diphtheriae bv. gravis strain 4601 Contig_123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 82792 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 82730 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 82666 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 82602 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 82538 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 82474 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 82410 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 96.4 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : TCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCAT # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 284-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSXU01000023.1 Corynebacterium diphtheriae bv. gravis strain 4601 Contig_126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 283 29 100.0 32 ............................. GGGTCGGGTCTGATGGCATGCCGGTCGCTCGC 222 29 100.0 32 ............................. TTCGGCAGCGTCACGCGCAGCGACCTCGCTTT 161 29 96.6 32 A............................ AAAATGTGGGGAGAATCCCCGCAATCTGAGCT 100 29 100.0 32 ............................. TCAGCAAATAACACCCGTGGATGGTGCTTTAA 39 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GGAAATACCTCCGCGTGTGCGGAGAAGAC # Left flank : CCCGGTGACGATCACGCGCATGCCCTTGGTGAGGGATTCTGCAACGTTTTCGGCAGCTTGGTGCCAAATGTTGCACTGCAAGAAAACCGCGTCACCATCTACCCACTGGTTCGACCGGGAGTCGTACTTCTTGGAGGTAGAAGCAACACGGAAGCTGGTTACTGCTACACCATTAGGGGTGAAGCGAAGTTCTGGGTCTGCAACGAGATTACCAACAATGGTGACGTTGACTTCGCCTTGTGCCATTTTCTTTGTCCTTTGATCTAGTGCGCGTTGAAGGTATGCGCGCCCCACCACGCAGCACTTACACTGCTTCTTCTATAAGTTCCCGCACTTGCCCATCTTCAATCACAATGCCATGTTCACCGGTTTCATCAACCAGCTCAACCCACACCTGGAATCCTGTTTCTGTCGCAATATCGGAGAGAATCTTCTGAGACTCGGAGTCCATGAGCGAGCCATCAGACACACGCATCACACGAATATTTGGATTGCCTGCC # Right flank : CCTGCGCGGTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCGTGTGCGGAGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 115675-116803 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSXU01000045.1 Corynebacterium diphtheriae bv. gravis strain 4601 Contig_160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115675 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 115736 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 115797 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 115858 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 115920 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 115982 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 116043 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 116104 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 116165 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 116226 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 116287 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 116348 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 116409 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 116470 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 116531 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 116592 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 116653 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 116714 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 116775 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : TTAAAGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //