Array 1 82990-83933 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVP01000007.1 Salmonella enterica strain BCW_6285 NODE_7_length_210263_cov_2.40445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82990 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 83051 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 83112 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 83173 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 83234 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 83295 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 83356 29 100.0 32 ............................. TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 83417 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 83478 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 83539 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 83600 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 83661 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 83722 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 83783 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 83845 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 83906 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 100202-102244 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVP01000007.1 Salmonella enterica strain BCW_6285 NODE_7_length_210263_cov_2.40445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100202 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 100263 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 100324 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 100385 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 100446 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 100507 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 100568 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 100629 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 100690 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 100751 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 100812 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 100873 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 100934 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 100995 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 101056 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 101117 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 101178 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 101239 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 101300 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 101361 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 101422 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 101483 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 101544 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 101605 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 101666 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 101727 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 101788 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 101849 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 101910 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 101971 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 102032 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 102093 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 102154 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 102215 29 96.6 0 A............................ | A [102241] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //