Array 1 172841-174333 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHB01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain N27403 NODE_4_length_274259_cov_4.70052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 172841 29 100.0 32 ............................. TAACTCTCGTTCCGTTCCATAGGTAGCTGTAA 172902 29 100.0 32 ............................. GGGGAATGAGCATGACCGTAGCACTAAGAGAT 172963 29 100.0 32 ............................. ACGAATGAAAAGCTGGCTTCGGCGTTAGAGAA 173024 29 100.0 32 ............................. TTCGACAGTGATCGCATGGTTGGCGGCAAGCT 173085 29 100.0 32 ............................. GTGATCCGTTCCGACCTGGGCATGAGTATCAG 173146 29 100.0 32 ............................. TCGAATATAACCATATTTTGGTTATTTAATAA 173207 29 100.0 32 ............................. AGTCTCAACGAAAAATGCTGTCTATCCGGTTG 173268 29 100.0 32 ............................. CTGGGGCTTATTCCTGACGGTATTGAGCGCGC 173329 29 100.0 32 ............................. TGCATGAAATGGATGGGGATTATTTTTTCGAA 173390 29 100.0 32 ............................. TTTTTGGCCGCATCAATGCACAGGGCAACGTT 173451 29 100.0 32 ............................. GCGACCTAGGCCGCATTCAGTTGCTTAGCCAT 173512 29 100.0 32 ............................. AAAATTTTAGGGGATTCAGAGGAAATGGTAAT 173573 29 100.0 32 ............................. CGACCAGCATCAATATGCTGGGAGTATGGCGT 173634 29 100.0 32 ............................. CTTTCTATCTTTCTGCGCATAGAGTCTCGGAG 173695 29 100.0 32 ............................. TCACGATAGAAATCGATGTTCCAGATAACGCA 173756 29 100.0 32 ............................. CGAAACATCTGGACGGCTGGATACGCGCAGGA 173817 29 100.0 32 ............................. TTTTATACTTCATTTTCTGATTCATACACTGG 173878 29 100.0 32 ............................. AAAATTCATGGTTTACCAGCGCCGCGACGGAT 173939 29 100.0 32 ............................. CCCATCTACCGACTGTTATTGCTGGTGCTACA 174000 29 100.0 32 ............................. GCGGAATGAGCGTAGTTTCCGGCAGTGGCTGG 174061 29 100.0 32 ............................. GTTTGGTAACAATCGGTTCGGGTAGCACAACT 174122 29 100.0 32 ............................. GTTAAATGCGGGGAAAGTGACGCAGAACGATC 174183 29 100.0 32 ............................. CAAACAGGAAACAGACAGGCCACCGTTCGTTA 174244 29 100.0 32 ............................. CGCTTCTTTCAAGAGGTGCTTCAGTGGACCGA 174305 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGCGTGGTCGGCATAAACAAAGCCGGTTCCTTTTAGCTCTTGCCCTAACCAGCCCTCTTCTGCGTGCTCTTGCCACTCCGGGGCCAGAATATGCAATATGGGCGGCTGGCGACCGTCGGGCAGCGCGGATTGACGTTGCCCGTGGGCGTCGCGAATATGACGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCGAGATCGGAGATCATCCAGTCAAAATCCAGATCGAGGCTCTGCTCAACGACCTGTGTAGCGATCAATACTTTACCCCGTCGTTCTGAAACGGGGGCGCTGTTACCGAACCAATTAAGCGTTTTGTCTTCAATGGCAATCCGATCGGCAAAGGCAAAACGGCTGTGAAAGAGTAATAAATCCTGCTCTGGAATGAGTCCTTCATGTAATAACTGCTGATAAATTTCCCGTGCATCGTCAACCGTATTGCGGATCCAGCAAACGCACTGCCCGGCGGCCACCACGCGGTAAATAATG # Right flank : TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGATTTATCGAAAACCTCCGCATCATTACAGCAGCCCGTTCCCTCGGGGTACGCCGGATTGAGTCCCGGATTGGTGCTGGCGGCGATACCATGATGGTGTGCAATCGCTAATGCTCGATCCCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGTAGCGTATTTTTCTTTTCAGTGTCACTCATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //