Array 1 415985-418088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIRCD010000002.1 Salmonella enterica subsp. enterica serovar Mississippi strain FSL R8-7996 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 415985 29 100.0 32 ............................. CTACAGGATCTAATTTTGATGGATCGGCATAC 416046 29 100.0 32 ............................. ATAGAGGATATAGACTATAATTTAGTTGTTAA 416107 29 100.0 32 ............................. CAGGTGCTTGGGATGGATGAAGTTGACGGGAT 416168 29 100.0 32 ............................. CGATCGGGGAAGCGCTCCGGGTCAGCAAATCA 416229 29 100.0 32 ............................. GCCGGGACCGCCGAGTCAGCGATCACGGTGAC 416290 29 100.0 32 ............................. TTCATTGCGAGATTCAACAAATCGCTCCGGGT 416351 29 100.0 32 ............................. CCTGCCGGAAACGTTTTTGACGCAACAACGGT 416412 29 100.0 32 ............................. TAACGGTGTGTGGGTCGGAGATGCCTCTGATG 416473 29 100.0 32 ............................. TTTATTATTTACGGCAGGGGCTAAGAGTACCA 416534 29 96.6 32 ............................C ATAATTTCATTATATACAGTATCTCCCGATAC 416595 29 100.0 32 ............................. ATAATAAAACTTTCATGATACCACCTAATCAT 416656 29 100.0 32 ............................. GTGGTACAATCGGAGGTGAAGGGGGTGTAAAA 416717 29 100.0 32 ............................. GATTAATATATGGCAGATACAATCGTTATTCC 416778 29 100.0 32 ............................. TAATATGAGTGAAAATAACAATTCATATTTGA 416839 29 100.0 33 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTAC 416901 29 100.0 33 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTAC 416963 29 100.0 32 ............................. GTAAATCAACTACTAATAGATTTTTATTAGTA 417024 29 100.0 32 ............................. CGACCAGGAGCTGCTCACGGAGAGCTCGCTGG 417085 29 100.0 32 ............................. CTATCATTAATAGATAATGTAATAGAGGCTAA 417146 29 100.0 32 ............................. TGATTGAGCTACATTATAAACGAATGATGAAT 417207 29 100.0 32 ............................. AACTGCAATTATTTATAGTAAATTATCCAGAA 417268 29 100.0 32 ............................. AATTTGCTCTCACGCCTGGCGACCCGTCTCGA 417329 29 100.0 32 ............................. TGTGATCTGATCGCCTCTGGCGTCACTGTACG 417390 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 417451 29 100.0 32 ............................. GAGTATAGTTCTATGGGCCTGGAAAAACAGAA 417512 29 100.0 32 ............................. GCAACCAAAAAGGCCGCGAAATCGCAGCGCCG 417573 29 100.0 32 ............................. GGTGTAATAATAATTGGGATAAATTCGTAAGT 417634 29 100.0 32 ............................. TGAATAATATTACTCCCTTTTAAGGGAGTTGG 417695 29 100.0 32 ............................. TGCTTCTTCTGGATTTTCTTTAGGTTTCTCAT 417756 29 100.0 32 ............................. TGACTGTATCAGCCGCAGCAAACGCACACTCC 417817 29 100.0 32 ............................. TTGCCAACCCACAGCAGTCCGTCAGTAAAATC 417878 29 100.0 32 ............................. GTTATTCTCAAAACACCGCTACGCCGGGGTGA 417939 29 100.0 32 ............................. ACCATTTATTGCAGAGATCGTAACATCTAACC 418000 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 418061 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGTTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCTGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 434647-437422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIRCD010000002.1 Salmonella enterica subsp. enterica serovar Mississippi strain FSL R8-7996 scaffold2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 434647 29 100.0 32 ............................. CATTTTTAGTTAAACTAGCTAATAATATAATA 434708 29 100.0 32 ............................. TGTGGCTTATATGAAATTTCCTATTAACATGT 434769 29 100.0 32 ............................. GTTGGGTAACTGAATATGTTTCTAATAATAAT 434830 29 100.0 32 ............................. AGAAGCGGGTGCGTATGCCGGCAGCAAAAATC 434891 29 100.0 32 ............................. TTTCAGGCAATTTTTTCCGGCAACGGAACGAA 434952 29 100.0 32 ............................. CCACATTGAAATGCTCGAGGACGCCGCAGACC 435013 29 100.0 32 ............................. GCCGAATGCAAAACCCCCGCAAACAGCAGCAA 435074 29 100.0 32 ............................. TTTTATGTATGTATCTTTCAATATCAAAATAT 435135 29 100.0 32 ............................. AATTCCCGACCCCATCAGCAACATTAACTCCG 435196 29 100.0 32 ............................. ATTAACCCTCAAATGTGGTTATTTGCGCAGGC 435257 29 100.0 32 ............................. ATAGATTCTCTTAAATCATTCATTAATTTAAA 435318 29 100.0 32 ............................. CTGAATTGCTGCATCCAGGCGATCCGACCATG 435379 29 100.0 32 ............................. GATTAGTTTTACTGTAAGCCTTGTATGAATCT 435440 29 100.0 32 ............................. CCCCATATGGTATGGGGCCAGAGTAATCAGGT 435501 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 435562 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 435623 29 100.0 32 ............................. GCCGCTTTTGTGGCTGTTTCCGCGAACTTAGC 435684 29 100.0 32 ............................. GGATCAAACGGGTTACAATGCCGTCACTGAGT 435745 29 100.0 32 ............................. CGGTACCGAAAAAGAGTCCGTATTAAACGCAA 435806 29 100.0 32 ............................. AATGCAGTTTCACGCACACCTCGCCGGCAACG 435867 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCGCGTTGAGAGC 435928 29 100.0 32 ............................. CCAATGGAGAGGACGCGCAAAAAACTTCTCGT 435989 29 100.0 32 ............................. TTCCGTCCGGGCTGTCTGCGCCAATCGTAATC 436050 29 100.0 32 ............................. TTCGATTACAGTAAAATTTATGTTTATTCAAT 436111 29 100.0 32 ............................. AGAAGATATTAAACCCCATATAAACCCCACTC 436172 29 100.0 32 ............................. TGTGCCCGCTGACAATACCGTGGGTGTAGGCC 436233 29 100.0 32 ............................. GGCCGTATGGCTGCGCTACTGGATGAATTGAT 436294 29 100.0 32 ............................. ATCGCCTTAACTAAGTGCTCCGCTTCTGGTAG 436355 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 436416 29 100.0 32 ............................. GCGATGTCGTGTCTGCTACTCCCCATAATGGC 436477 29 100.0 32 ............................. CCCCGGTCATTTCCTCTGATATCAACGAGTTT 436538 29 100.0 32 ............................. GGATCTTCATCGGATTAGACAAAGAGAAAACC 436599 29 96.6 32 ............T................ GTCAACGAGGGATTGAATTGGTGGTGTATTGG 436660 29 100.0 32 ............................. ATACATTCCTTACTCCTCGCACATTCACGAAT 436721 29 100.0 32 ............................. GAGCTGTATACAAACGGGAATATTCCGCTATT 436782 29 100.0 32 ............................. GTAATTACCGCACAGCGCATGATTTTAGTACG 436843 29 100.0 32 ............................. CCACAGCGCGAAAGAGGTCTATTCCTGGCTGT 436904 29 100.0 33 ............................. CTACAATGTCAAAATGATGCCAGTTATCCTGGT 436966 29 100.0 32 ............................. AAAGAAGAAAATACAATGCTTGTAATGATGAA 437027 29 100.0 32 ............................. GTTTTTTCTCAGCGGCTGGCAGACCTGATCGC 437088 29 100.0 32 ............................. CGAGAAATGAGTGCCATTTAAACCCCGCCCGT 437149 29 100.0 32 ............................. TGCCGACGATACCCTGCAAAATCTGCGGCGGT 437210 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 437271 29 100.0 32 ............................. GCTGATAGCCAACCTGTAAGTGATCGTGATGA 437332 29 100.0 32 ............................. CTTTCTTCAGACATTTCTCCAACCCGGCAACC 437393 29 100.0 0 ............................. | A [437420] ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //