Array 1 1014806-1014953 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024518.1 Escherichia coli strain E148 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1014806 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 1014866 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 1014926 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTTGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGAATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCGGTCGGGGCTTCTCACCCCCCTGGAGTGCATTATGCGAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAATACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTAC # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3005227-3003368 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024518.1 Escherichia coli strain E148 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3005226 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 3005165 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 3005104 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 3005043 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 3004982 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 3004921 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 3004860 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 3004799 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 3004738 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 3004677 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 3004616 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 3004555 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 3004494 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 3004433 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 3004372 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 3004311 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 3004250 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 3004189 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 3004128 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 3004067 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 3004006 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 3003945 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 3003884 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 3003823 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 3003762 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 3003701 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 3003640 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 3003579 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 3003518 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 3003457 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 3003396 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3031870-3030926 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024518.1 Escherichia coli strain E148 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3031869 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 3031808 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 3031747 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 3031686 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 3031625 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 3031564 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 3031503 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 3031442 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 3031381 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 3031320 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 3031259 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 3031198 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 3031137 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 3031076 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 3031015 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 3030954 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //