Array 1 268-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALMT01000025.1 Streptococcus suis YS49 Contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 267 30 90.0 42 C....................G..G..... AGTTGAAGCACTTGTACTTGCCGATGTTGATGCGGACGTACT 195 30 100.0 42 .............................. TGTCGAAGCGGAGGTACTTGCGCTGGTTGAAGCTGACGTACT 123 30 100.0 42 .............................. GGTTGACGCTGACGTACTTGCTGACGTTGAAGCACTTGTGCT 51 30 83.3 0 ...G...........T.....G..G..A.. | ========== ====== ====== ====== ============================== ========================================== ================== 4 30 93.3 42 TGCACTTGTCGATGCAGACGTACTTGCGCT # Left flank : CCAAAAAAGCTCTATAATGTCGTCAATGGTTGAAACCACTAGCGAATTATAGAGCTATTTTTGATACGTCCCAATTAGTTTAGTTTAACGAAGAGTTCGCTTTTCTACTGCAATACAGAATTCTGTTAACTCTCTCAGTTCTATCTACAAACTGAATACCATTATGAAATATCATCATCTTCTCGCTCCTTACGACGACGTTTAGCCATAAGTGCAAAGGCTCCTCCTAACATTGTGGCACTCAACAATCCTGATACTGAGGACTGGGTCTCACCTGTATTAGGTAGCTTAGTTGCCTTCCGATTCACTGGTTTTGCAACTTCAGAAGTCATCGCAGACATACTTGCTGACGTTGAAGCACTTGTACTTGCGCTAGTTGAGACACTTATGCTTGCTGACAACGATTGAGAGGTACTTATGGATTCAGATACCGATTGAATATCAATTTTTGGTAATTCCATGGAAGTACCACCAGCATTTGATACAATCCAAATCTCTGA # Right flank : TCGTTGATGCGGACGTACTTGC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCACTTGTCGATGCAGACGTACTTGCGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 4925-4468 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALMT01000063.1 Streptococcus suis YS49 Contig00063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ====================================================================== ================== 4924 26 100.0 46 .......................... ACCAACAGATGGAGGCACTACCCCACCGACGGACGGAGGAGTTAAT 4852 26 100.0 39 .......................... GACGGAGGAGTTAATCCACCAACGGATGGAGGCACCATC 4780 26 92.3 29 .....G..A................. ACCAACAGATGGAGGCACTACCCCGCCAA Deletion [4726] 4725 26 100.0 36 .......................... GGCGGCACCACCCCGCCGACAGACGGCGGCACTACC 4684 26 88.5 46 ..A..G..C................. ACCGACCGACGGCGGCACCACCCCACCAACAGATGGAGGCACTACC 4612 26 92.3 0 ........A...........T..... - Deletion [4587] 4586 24 88.5 70 --A....................... ACCAATAGATGGAGGTACCACCCCACCAACCGACGGAGGAGTAAATCCGCCAACGGACGGAGGAGTAAAT 4492 25 92.3 0 .....................-...A | ========== ====== ====== ====== ========================== ====================================================================== ================== 8 26 94.2 38 CCGCCAACGGACGGCGGCACCACCCC # Left flank : | # Right flank : AAACTCCACCGACTGGTACAATCACTGTTACACCAAAAGCAGGCACTGCACAGTTGCCAAATACTGGTGAAGCCAGCACCAGTCCTCTATATGGAGTACTAGCCTTTGCTACAGGTCTAGCAGGACTCTTTAGTTTGGTGAAGAAGAAAAAAGAAGAAGACCAGTAGTACATAATGACTAGTCTTCTACGGGCTTGTTAGCATGCCTGACCCTCGAGATTTCATATCTTGAGGGTCTTTGTTATATGGCTCTTTGTCAACTGTAGCAGTGGATATTACTCACTACAGAAATTATAGAGCCTTTCTTCATGCGTATGACCTGTTGTATATAGCTGGTTTCTTTCTCGCTGATTAGGTTTGTGGTATAATGTTGATTATTAAGCAAGTTAGGTAAACATTGAATGGAGAATGTCATGTCGCAGGATAAGTGGTTGGAATGGGCCGTACGTTTACAAGCCTTGGCTCAGACAGGCTTGGCCTATGGAAAAGATGTCTATGACA # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCCAACGGACGGCGGCACCACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //