Array 1 288011-286180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049756.1 Pasteurella multocida strain KVNON-213 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 288010 28 100.0 32 ............................ TGACGGGAGGGGCGACGGCTGTAGCCCCGTAA 287950 28 100.0 32 ............................ AAAGCACCACCCGCAGTTATCCCAATGAATGC 287890 28 100.0 32 ............................ TTCTTTTTAGGGCTTTGCGGCTATGTCATTTT 287830 28 100.0 32 ............................ ATTGAAGAGCTTGCTTCCAGATTATAAAGCAA 287770 28 100.0 32 ............................ ACTATGTATTCTCGGCTCCATGCTTGAACCTT 287710 28 100.0 32 ............................ AACTGATTTATTAGTGGTTATGTCTAAGCGTT 287650 28 100.0 32 ............................ AACGGTTCTTCAAGTAGTGGCGGTAATGCACA 287590 28 100.0 32 ............................ TTTTTAGGTGATGGGATATTTCGTTATGCTGA 287530 28 100.0 32 ............................ TTTGAGGCGTTAGAGAACCAAGCTAAGCAAGA 287470 28 100.0 32 ............................ TTTGAGGCGTTAGAGAACCAAGCTAAGCAAGA 287410 28 100.0 33 ............................ CGTTTACAATTGGGTAGATGTTTACTCGCACAT 287349 28 100.0 33 ............................ ACCGCACTCAACAAGACGGAACCAAAGCCCGAA 287288 28 100.0 32 ............................ GATTACAGGCTGAAGCTGACAGAGTACGACAA 287228 28 100.0 32 ............................ TTTTTAGGGTCAAGTGCCGCTGTACGCATAGC 287168 28 100.0 32 ............................ CGTGTAAAACCCTTCACCGAACAGTTCTTCTG 287108 28 100.0 32 ............................ TTATTTAATTCACATTCATCCAGCCTCAGTTT 287048 28 100.0 32 ............................ ACCATTTGCTAACGTTAAAAATCGACGCATAA 286988 28 100.0 33 ............................ AATCAACGCTTTGCTTGCGACATCGCGCTCAAT 286927 28 100.0 32 ............................ TCTTCACTCTCAAAACTTATCGTCACTGAATT 286867 28 100.0 32 ............................ GTTTTCCCTCTGTAATTCGGGCTATTATTAAA 286807 28 100.0 32 ............................ GTTTTACAGTTCCAGCTATCGTTGATAGTTTT 286747 28 100.0 32 ............................ TATCAGTAGGGCTAAAGGTTGTAGATGATGAA 286687 28 100.0 32 ............................ ACTTAACCAAATCCAGTTACCGCAAATTTCAA 286627 28 100.0 32 ............................ AGACTGGATAATAGATTGTAATAAACAACAGT 286567 28 100.0 32 ............................ GCAACAAAAGCAGCGCAGACTGCAACCAGAAG 286507 28 100.0 32 ............................ AATAAAACGGATCGCTTAAAATTTCGTTGTAT 286447 28 100.0 32 ............................ TCTTGCTTCGCTCTCTAATCGACTAATTTCGA 286387 28 100.0 32 ............................ ATGACTAATGCCATAAGCTGTTACATACTCAA 286327 28 100.0 32 ............................ TCTTAAGTCTTTGTCATCTTCGATATTAATCA 286267 28 100.0 32 ............................ AAATTGTAATTTATCTAATAAATATGATAGCT 286207 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATTTAGCTTATCAGGTAAAAGCAACCGGCTCAGTTCACTGCCATGTAAGCAGTGTCAATTGACTGTTGGTATATTACCTAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCACTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTGTCGGCACGCTGTTTCTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCTTGTACGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1056645-1056213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049756.1 Pasteurella multocida strain KVNON-213 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1056644 36 100.0 30 .................................... TATGGCGCTCGGACACTCGCGGTGTTCTGA 1056578 36 100.0 30 .................................... TAACAATAAAAAATATGGTGCTTACTCTGC 1056512 36 100.0 30 .................................... TGTGCTGGTGGACGATAGTATTATTGATGA 1056446 36 100.0 30 .................................... GAAAAAACCGCAGTTAACTTACCACCGTTT 1056380 36 100.0 30 .................................... TAAATGGACTAATTCTGATAAATCGGCAGG 1056314 36 100.0 30 .................................... AAGTTGAATTTAATAGCGCGAAATACTTAA 1056248 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : ACGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : GTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAAAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTGCTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCTGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 1631217-1630260 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049756.1 Pasteurella multocida strain KVNON-213 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1631216 37 97.3 35 .......A............................. TGGTATTTGCGTGGAAATTTGCGAGCACCACTAGT 1631144 37 100.0 32 ..................................... TCGCTTTGATGAGAGTACGAACTTGTTTGTTT 1631075 37 100.0 32 ..................................... TTTTCCATTTGTTAGTCCTCCATTGTTAAAAT 1631006 37 100.0 36 ..................................... TCACGCAATAGATAACCGTCAGGTGAGATCGGGGTG 1630933 37 100.0 33 ..................................... CCGCTTTGATAAGAGTAAGAATCTGTTTATTAG 1630863 37 100.0 32 ..................................... ATGTACTCTTCGCCACTAGATACAAGGGTGAA 1630794 37 100.0 34 ..................................... CGAAACGTTCTATAAGCTCCTCGACGGACTCCAT 1630723 37 100.0 30 ..................................... ACCATCTTGTGTATATACTGTTGGATTCTC 1630656 37 100.0 36 ..................................... TGACACTTGATATTAAACAACCAACAATTTCCTTTG 1630583 37 100.0 35 ..................................... GTCACGTGTCAACGGGATGTACTCGATTTCGATCA 1630511 37 100.0 35 ..................................... ACCAATATATGTACTGAACCCTTTGTATGTGATAT 1630439 37 100.0 35 ..................................... ATTGCGATCAGGGTGATATTTGATAGCCATTTTTT 1630367 37 97.3 34 ....................................T TAATCAATTTAGATACAATTTTTTCTTCCTTTCT 1630296 37 75.7 0 ...........T.A........C...A.A...T.TTT | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 97.9 34 GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Left flank : CAACAAACATTTTCGCCAAACGCACGGGGGTTTCTTCTAAACTATCATCGCGTAAATCTAACCCAATCAGCTTCATCACTTCACGCATATGTTGTTCAATCCCCGCTCGACGCGTATCTCTGTCTTGTTCTGGGGTAATCATTGGGGTTTCAATCCCCTTACTTAATAATGCATTGCGGACTTTTTCTGCTTCTGGTGAAATCTTGTTCATGTAAAACTCCCGATAAATAATCCGCACATTCTAGCAAACTCTCGCCAAAGTACAAATGAGAATAATTGGTAGAGAGGATGAAAAGTTTTGAGTTAAAACACGTTTTATAAAAAATAGACATAGTATAAAAAATAAACTTGAGGTAAAATAACCAAATTCTTTGGCTGACAGACTAGGTTTAAGTTGATTGTTTTTTGTTCAAATCAAGGGGTAGCTTTCCACATCAATGAAGAAATTGGGAAGCCTACAGATAACATTCTGAATACAAAAGAAAAATCCACCTATTACA # Right flank : ATGTAGCGTGGGCATACTTGCCCAGCACATAACCCCTACGCTTTCCCATTCGAAAGTACGATCATTTTTCAAAAAGTTTTACAGCTTTATCTCTGCTTATTTCTTATCAGTATAGGCTCAATAAAATGAGATCATCCTGCTTTTTTGGTATAAAATATTGCCCGTTAAACTCAACTAAGGATTCAATTATGTTGCCTCTTGAACAAGCACTGACTCAAATGCTCGCTATGTTGCCAACACCTGATTGTGCGCAAGCCGAACAACTCCCCCTTCAACACGCGGTGAATCGCATTTGTGCTGAGGATATCATTTCCCCGCTTAATGTGCCCTCGTTTGATAACTCGGCGATGGACGGCTATGCGGTGCGGCTGGCAGATTTAGCACAAAATTTAACTCTCACCGTAGCAGGAAAATCCTTTGCGGGCGCACCTTTTGACGGAGAATGGCAAGCACAAAGCACGGTCAGAATTATGACAGGGGCAATGTTGCCAGCCGGTGCG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 4 2107850-2107283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049756.1 Pasteurella multocida strain KVNON-213 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2107849 28 100.0 32 ............................ ATCAGAACGCATAACACCAATACCAATCTGAT 2107789 28 100.0 32 ............................ AAGTGGCAGCCGAGAAATTTGGTTAAAAATAC 2107729 28 100.0 32 ............................ AACACAGAGTAATGCCGGTCTAATTTGCCCCC 2107669 28 100.0 32 ............................ TTCTTTATCTACTTGGAAAGCATCATTGATAA 2107609 28 100.0 32 ............................ GCTTGAATGCGTTCATCGAACGTTAAGCGGTC 2107549 28 100.0 32 ............................ GGGAAAAAGCGATATTCATATCGACGATATCG 2107489 28 100.0 32 ............................ CGCTACGCAAACACCCTAGAACAAGTGGTTAA 2107429 28 100.0 32 ............................ AGATGCAATCCCTCTTGCTGAGCGTCGTTTCG 2107369 28 100.0 32 ............................ ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 2107309 27 89.3 0 ........-...............A.C. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTAGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTATTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : CTCATAATCGGAAGAGAGCGAGTTTGAATCGTTAATTATCAACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACCTCAGTTAAAGAACAGAAAAGGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCCGCGATGCGAGAGTTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGCACCCCCTTGTTTAATGGCACAGAAGCCGAGATTGGCTGTGAGTTTTTTAGCCCACAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //