Array 1 66559-67962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSN010000006.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 1379 CIRM_BIA1379-i1-1_scf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================ ================== 66559 36 100.0 30 .................................... ATCCGGCAGAACTAGTTGTTCCGCCGGGAG 66625 36 100.0 30 .................................... TATTAACACCGACACCGACGGCCCAAACCC 66691 36 100.0 30 .................................... CCTCTGCTTGTTTAAGCTTGCTTATCGTTG 66757 36 100.0 30 .................................... GGCGCCAGCAGAGCGTTATCGCGTTGCTCA 66823 36 100.0 30 .................................... ATTGCTTGGTTAAGCTAGCAGTTGCGTTAT 66889 36 100.0 30 .................................... CAATTAACTTTATTTCCTTTACGCTTTATA 66955 36 100.0 30 .................................... TTTCTCGGGGATTATTGCTTTGGTTAAGGA 67021 36 100.0 30 .................................... GCATTCTTGATCTTAGACATATCGTTAATA 67087 36 100.0 30 .................................... ACCTAACTGGGTCTACCAACAAGTACAGTG 67153 36 100.0 30 .................................... CTTAACACGGTTAGTATTCTGCACCACACA 67219 36 100.0 30 .................................... ATCCCTGCCTTAGTCTTGGGCGGCTGGATT 67285 36 100.0 30 .................................... CTCGGATCAGTGATCACATTGCTGTTTTTG 67351 36 100.0 30 .................................... AACTTTGAAATCAAATGACCAGCCTTCTTG 67417 36 100.0 30 .................................... CCATAGTTAAAATCTCCTCTTTAAATTAAG 67483 36 100.0 30 .................................... GCAAGGCGGCCGACTCACTAGCCAGTGCTG 67549 36 100.0 30 .................................... CAGCCCAGGCACGGGCTCTCTTGGCTTCTG 67615 36 100.0 30 .................................... CATTGTTACCACGCTTTCTATAAATCCTTC 67681 36 100.0 30 .................................... GATCTTGTCAGAGTGGTTGAGCATGTCGTC 67747 36 97.2 144 ...................................G CTGCTTGGATGCGTGGATTGAAATAGTTTTATAGGGGTGCTTATTCAATGTTGTCAATTTTCCCGATGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGTAGGTGGGGGTGATC 67927 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== ================================================================================================================================================ ================== 20 36 98.6 36 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTTCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTTAACAAGACACTCACTCACGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGCTGTAGAACAGTTTAACGAAATATCTAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAAGACCTTGTTGATTGGTACTAGCCTTAAATTAAAGCTGTGTTAAAAAATAACG # Right flank : GTGCTTTTCATGATTGAGAAGCACTTTTTTCTGTTGAACACAACAACTTAAAAAAACGTTAAATCAAACGCTTCACCAAGTAAGCAGGAAAAGATTATAGTAAAATACACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTAAGGAGAATAAACACATGAAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTATCACAAGCAATTGGCTGACTTTTCTGCTATCGACCTGGGCCAAATCGCCCTGCGCGGTGCATTAAAAGAAGCCGGCCTTGACGCCGAAGACCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAGAACATGGCCCGGCAAATTGCATTAAACGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGGCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //