Array 1 38510-36327 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYFV01000023.1 Acinetobacter baumannii UH22908 ctgN50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38509 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 38449 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 38389 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 38329 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 38269 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 38209 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 38149 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 38089 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 38029 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 37969 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 37909 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 37849 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 37789 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 37729 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 37669 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 37609 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 37549 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 37489 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 37429 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 37369 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 37309 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 37249 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 37189 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 37129 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 37069 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 37009 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 36949 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 36889 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 36829 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 36769 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 36709 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 36649 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 36589 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 36529 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 36474 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 36414 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 36353 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43600-47770 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYFV01000023.1 Acinetobacter baumannii UH22908 ctgN50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43600 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 43660 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 43720 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 43780 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 43840 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 43900 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 43960 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 44020 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 44080 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 44140 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 44200 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 44260 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 44320 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 44380 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 44440 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 44500 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 44560 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 44622 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 44682 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 44742 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 44802 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 44862 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 44922 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 44982 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 45042 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 45102 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 45162 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 45222 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 45282 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 45342 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 45402 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 45462 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 45522 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 45582 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 45642 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 45702 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 45762 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 45822 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 45882 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 45942 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 46002 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 46062 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 46122 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 46182 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 46242 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 46302 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 46362 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 46422 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 46482 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 46542 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 46602 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 46662 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 46722 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 46782 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 46842 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 46902 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 46962 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 47022 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 47082 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 47142 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 47202 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 47262 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 47322 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 47382 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 47442 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 47502 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 47562 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 47622 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 47682 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 47742 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 70 29 93.6 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //