Array 1 225094-226157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDF01000009.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000219 CFSAN000219_contig0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 225094 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 225155 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 225216 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 225277 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 225338 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 225399 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 225460 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 225521 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 225582 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 225643 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 225704 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 225765 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 225826 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 225887 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 225948 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 226009 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 226070 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 226130 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 242280-243591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDF01000009.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000219 CFSAN000219_contig0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 242280 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 242341 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 242402 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 242463 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 242524 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 242585 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 242646 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 242707 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 242768 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 242829 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 242890 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 242951 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 243012 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 243073 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 243134 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 243195 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 243256 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 243318 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 243379 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 243440 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 243501 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 243562 29 96.6 0 ...............A............. | A [243589] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //