Array 1 1081776-1080086 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018335.1 Ureibacillus thermosphaericus strain A1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1081775 35 86.1 30 .A.......-.GT.........A............. GGTTGTACCTTCTTTTGTTTTGGAAGCAAT GT,CT,T [1081754,1081757,1081771] 1081705 36 100.0 30 .................................... CCATCACTACGTCTGCGTCAAAATCACGAC 1081639 36 100.0 30 .................................... ACCCCTGAGGATAGAAGAATCACAAATGCG 1081573 36 100.0 30 .................................... AAGAACGCTATCAATCAACAATGGATGAAG 1081507 36 100.0 30 .................................... TGTACAACGGGGTCGATAATATCCTACAAA 1081441 36 100.0 30 .................................... TATGGCGCAGGAATGATGCGAGTTCGATTA 1081375 36 100.0 30 .................................... ATTTTCCCCGCACAATATCTCCTGCATAAA 1081309 36 100.0 30 .................................... ATTTTCCCCGCACAATATCTCCTGCATAAA 1081243 36 100.0 30 .................................... TGTATGCGTATGGTTAGATGGCGTATATGT 1081177 36 100.0 30 .................................... ATGTCTTTATCCAACCATCCACGTTTTTTA 1081111 36 100.0 30 .................................... TAAGGAACGTAGGTTATCAAGTGTCTGAAA 1081045 36 100.0 30 .................................... ATTCCTCGAATTGTTTCTCAAACGCCATAT 1080979 36 100.0 30 .................................... TCACCTGCTTTAATGATCATGTTTCTCACA 1080913 36 100.0 30 .................................... CAATCCGCCAAAACTTATTGCCCCAATAAT 1080847 36 100.0 30 .................................... ACCTTGTGGAATACCATAACGAGCCATATT 1080781 36 100.0 30 .................................... TATAATGAGTGGATTGTTTTTATTGTTCCA 1080715 36 100.0 30 .................................... CCAATTGTTTGACGTTGGTTCAATGGGTCA 1080649 36 100.0 30 .................................... GTAACAGTAGTTCTTGGTCGACAACCATAC 1080583 36 100.0 30 .................................... GCTTTACTGCATAAGTGTTGTGTTTTGGAA 1080517 36 100.0 30 .................................... TTAGTGAACCATTATACCTTTCTGTTCGTG 1080451 36 100.0 30 .................................... CACGTGTTTCCTTCCCGGATTCGTCCAACG 1080385 36 100.0 30 .................................... TTATATACGCACCCGATGAATGACACTAAT 1080319 36 100.0 30 .................................... GAAGTCCTGGCTCTAATCCAAGTTGAGCTG 1080253 36 100.0 30 .................................... TGAACAGCTTCAATCACGACTGGTTTCTTA 1080187 36 100.0 30 .................................... TTGCTCTTCTGTTAGTCCAAGAGCAATTAA 1080121 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.5 30 ATTCAACTATACCGAAAAACTGGAGAGTACCGAAAC # Left flank : CTATTCGAACAAGCGGACACCCTATTCGCACAAGTTGACGCGCTATCTGAACAAGCGGACGTGTTATCCGAACAAGTTGCCGCGCTATTCGAACAAGCGGACACCCTATTCGCACAAGTTGACGCGCTATCTGAACAAGCGGACACCCTATTCGCACAAGTTGACACGCTATTCGAACAAGTGACACGCTATCCGAACAAGAGGACGTGTTATCCGAACAAGTTGACACGCTATTCGAACAAGTTGAAGCGCTATCTGAACAAGAGGACGTGTTATCCGAACAAGTTGCCACGCTATCCGAACAAGCGGACGTGTTATCCGAACAAGTTGCCACGCTATCTGAACAAGCGGACACCCTATTCGCACAAGTTGCCACGCTATTCGAACAAGCGGACACCCTATTCGCACAAGTTGCCACGCTATTCGAACAAGCGGACACCCTATTCGCACAAGTTGCCGCGCTATCTGAACAAGCGGACACCCTATTCATAAAGGCAGAC # Right flank : CTCAATTTTATTATAGCAGAAGCATAAAAAAACGTTCAGTACTCAGCAAAAAATTTTTTAAGATTAGGCGGAAACTTTGTGAAATCAATATCCCATTCAATCTCCAATAATTTTAAAATTACATACAGTACTACAATGTGTGTTCTGTGGATATTATTCAAATCTAATAAAAACTCCCCCTTTATGCCCACCTTATCCACAGAACTTAACAATAACTCTTTCGTTTTCAAAAAATCCTCATTTTCGATTGGAATAGGAATAGTATTAAATACTTTTGATCTTAGCATTTCCACCCTTGCTTCATTAATCACTTGACCTTTTAAAATAAAATTGCTTCTTCCTTCCACATCATCAAGAGTTGTGATGATAATCGCATAACAACCTCTATTCATTAATTGTTTTAGTATCAATAATAATTCCTCAATTTCTTGTTCATCCGCATACAATTCAGGTAGCTCAATAATAATTAGAAGTCGCTTTGTAATTTCCTTTTCTAATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAACTATACCGAAAAACTGGAGAGTACCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 3232624-3234827 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018335.1 Ureibacillus thermosphaericus strain A1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 3232624 29 100.0 37 ............................. TACCAAGTGTTGAATTGTTAATCGTTCCGGAATAATC 3232690 29 100.0 38 ............................. GTCGTAAAGTTGGTTTCATTGAAGCTCGAAAACTTCAA 3232757 29 100.0 37 ............................. GTCAACTTGCTCAAGCATTAGAATACGCCAGTAAAAA 3232823 29 100.0 37 ............................. TACCAAGTGTTGAATTGTTAATCGTTCCGGAATAATC 3232889 29 100.0 38 ............................. GTCGTAAAGTTGGTTTCATTGAAGCTCGAAAACTTCAA 3232956 29 100.0 37 ............................. GTCAACTTGCTCAAGCATTAGAATACGCCAGTAAAAA 3233022 29 100.0 36 ............................. GGATGAAACTGTCGAAACAATTGACAAATGGATGCA 3233087 29 100.0 39 ............................. ATGACCGCAACGCCAGGCGAAACTATAAAAAAAAAATAA 3233155 29 100.0 41 ............................. GAGCACGGCGTACAATACATCGGCGACATTCCATATGGAAA 3233225 29 100.0 34 ............................. ACGAATGGCTCCAAACAATTGATAAAGTTGTGGA 3233288 29 100.0 38 ............................. TGCAATGACGACAATTCGGACAACTCCACCGCTACGAG 3233355 29 100.0 36 ............................. CAAGACAATTCAATTCCTAATGCTTGCAAAAATAAA 3233420 29 100.0 35 ............................. GGTGACAAACCTGCCGAATGCGCAGGAACAAACTA 3233484 29 100.0 38 ............................. GCACGTGGTGTTGGAATTATGGTTCGTTGTCCTGTTCC 3233551 29 100.0 38 ............................. AACCTTGGTGCATCATCCTCCCTCCTTTACCGAGGAAA 3233618 29 100.0 36 ............................. GAAATTGTAGAAATCGACGAATGATGACTATTAAAA 3233683 29 100.0 36 ............................. AACAAGATAACGTTTATACATTAAATCTACAATTTC 3233748 29 100.0 39 ............................. TCAGCAATCAAAGTGCTTTTGCAACACTTTGTATTTATG 3233816 29 100.0 37 ............................. CTAAAGTCCATACAGAGATAAATTCTTTTGGAATCAA 3233882 29 100.0 38 ............................. TTAACTTCGTTTGATACAACGAATATTGTTACATCAGT 3233949 29 100.0 40 ............................. ATGTACCTTATTCAAATTTAAAAGCAGAAATGGCTAGAGA 3234018 29 100.0 37 ............................. GCATTTCTTCTGTAAGTTTAATAGTTTTCGAGAAATC 3234084 29 100.0 36 ............................. TTAAAGTGCTTGATTACACAGTGAAGTAATGAAGAA 3234149 29 100.0 34 ............................. ATGAGTTAGATATCAATAAGGTCGAGGAAGAATT 3234212 29 100.0 35 ............................. GGTCGTTTATGCTGAGAAAGTCCCTTTATAATGAG 3234276 29 100.0 37 ............................. TTGATGAGATGACTACAAATTCACGTCCTCCATGGCT 3234342 29 100.0 36 ............................. TATCCGAACGGCTTTAATGAGGAAGATAGCAAGAAT 3234407 29 100.0 37 ............................. TAAATTTTAATACAGCAGTATCCCCACGTTTAAATAT 3234473 29 100.0 35 ............................. GTATAAAGCGAGGGGAGAAATCCCCTCAATCATAA 3234537 29 100.0 39 ............................. GAGACATCCGATTTATCAGAAGAAATAGCAAAGCAAAAC 3234605 29 100.0 36 ............................. ACCGAAAATATTAGTTGCCAGCGGAGCGAAACGTGC 3234670 29 100.0 37 ............................. TTCGAATGCGTTTTTTATGTCATCAACAAGCGAATCA 3234736 29 100.0 34 ............................. ACGGGGCTATTGTGGTGCTAGCAGAAGATGTTGA 3234799 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 34 29 100.0 37 CTTTAAATCCCTCTAAGTTCAGATAAAAC # Left flank : AAAATAAAATCAATAAAAAACAAGAGAAATAATGAAAGACGATATAAAACAGTCATATCAAGAGTTGCAATAAGATATTACTCTGCGAAAGTTGAGTAATATACATATGCCAGTTGTAATAAGATTTCTGGCATTGTATTTCCATTTGTAATTTCCGTCGTTAAAATTTTTTCGGCTAATGTAAATTTTTTTAGTTTACAATTCAACATTGCTAATTCTAACGGATCTCGTTTGCTTGCTAATGTTGCACGAGGAATAAACTTTTCAACTTGCTGCTCTTTTAAATGTTCGTCTACCGCTTTTTTAAATTCAGTGCGGAAATCGGTAACCGACTGATATCGTATTTCCGGATTTCTCTCTAACGCCTTCATGATTACCTTTTCCATCGAAGGTGTAATACTATCGTTTAATTCTCTTGGTTTTGGAAAAGGGACATTATGAATCACGTTAAAATATGTGTCATGCGGAGTTTTTCCTGTTAACAATTGATATAACAAAAC # Right flank : CAACCATACGCCGTTATTGGTAAGCGTAAAATAATCCCCACCTTTTAATGATAGGGATTAAATACTATTATTGTGATAAGTTATTAAAAACCCGACAATTCAAAGGAATTGTTTTGGACCAAGGAAGTAGTTGATCAAGCTCATCCATATTGCTTATATCCATATTGGGAAGCCTTTCAAATAAGTAGCGAAGATAATAAAATGGATTTAATTTATTCTCTTTTGCTGTCTCCACAATACTGTAAATGATTGAGCTGGCCTTAGCTCCTTTCGGAGTATTGCTAAAAATCCAGTTCTTCCTTCCGATCACAAATGGTTTAATGGATCGTTCACTTCGATTATTATCGATTTCTAAACGTCCATCCTCTAAAAATGCCACGAGTTTTTCCCATTGGTTGAGGCAGTATGTAATGGCTTGACCTAATAGACTCTTTGGTAAAACATTGCTTTTCTCTGTTTTTAGCCATGCTGAAAAAGCCTCCAACAATGGTTGGCTGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCCCTCTAAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 3237316-3240760 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018335.1 Ureibacillus thermosphaericus strain A1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3237316 29 100.0 36 ............................. AAAGAAAACAGCAAAAAATAATTCGAGCGGACGGAA 3237381 29 100.0 39 ............................. GGGCGTTGCTCAATACGGAATTGAAGCAACATTACCAAA 3237449 29 100.0 36 ............................. CGAGTTCTACGTGAAATTAAGTTTGTTGCTGATGGA 3237514 29 100.0 36 ............................. CCACCAACAATTTATTTCGATAAAGGCGAAACCGCA 3237579 29 100.0 36 ............................. AATAATGAGTGTTGAATATTTTTTTCTTAAACTTGT 3237644 29 100.0 36 ............................. AAATATCAGTGCAGTCCATATCTTCTCTGATTTAAT 3237709 29 100.0 37 ............................. ACAAAAGCTGATAAAAAACGAATTGCTGACCGTGCAG 3237775 29 100.0 38 ............................. TGTTAAAATATGAAAACATTTAAAGTCCATATTAATGG 3237842 29 100.0 39 ............................. TAGACGCTTTAACAAAAGCCGATTGTATCAAAATTTTCG 3237910 29 100.0 37 ............................. TGAGATGTATAGACGTCAATATTCAATTTTACAACAA 3237976 29 100.0 36 ............................. AACACATGAGATGATGATAAAAGATGCAAAAACAAA 3238041 29 100.0 36 ............................. GGTACAAATACAAGCAGTTAATGAAGAAGTACAAGC 3238106 29 100.0 36 ............................. AGACGGGATTAGAGCTGGTGGAGTTGTTTTGAATAG 3238171 29 100.0 39 ............................. CCACTGTTTCACCACCTAAATAAAAAAACGCCCTTTAAA 3238239 29 100.0 39 ............................. TTGCCGAACGTCTTAAGGAGTTAAGATTGAAAAAGAAAG 3238307 29 100.0 37 ............................. TTGAGCAGCTCCACCAAAACCGCTTTCTATGGCATTG 3238373 29 100.0 37 ............................. AAGGTGGAATAATGTTTGTTGATATTGTCACTTCTAA 3238439 29 100.0 35 ............................. ATGTAAGGAATGAATGGAACTGTAATTTTGAAAAC 3238503 29 100.0 34 ............................. GAGATAACGAAGAGTGGGAAGATATGGTTTCAAA 3238566 29 100.0 36 ............................. TATTAAAGAACGTTATTTTGTGATTGTGGATGAAGT 3238631 29 100.0 39 ............................. GATGGTGAATTTCCGCTGGAATCTCTACCAATTTCTAAG 3238699 29 100.0 37 ............................. TTTATTGTTCGTAGCGATCATTGCTGCAGCGTTTTAA 3238765 29 100.0 37 ............................. GTGGGGGGGCGTAACTAATGCACCATATATTTTTTGA 3238831 29 100.0 38 ............................. CCCAATCGCTTTTTTGGATTTAGCGATTGAAAAATTGA 3238898 29 100.0 36 ............................. ACGAGCAGAATATATACAAGTAAGATTTTATTATCA 3238963 29 100.0 37 ............................. TATATCAAACAGATTCTAACCGTTATGAATATAAAGC 3239029 29 100.0 36 ............................. TTGATATTGGTAATAAACTAACACTGTCTCTCCAAT 3239094 29 100.0 36 ............................. CGAATTAGGTAATGCTACACAAGCAGCGATTAAAGC 3239159 29 100.0 38 ............................. TAACCACAGTATCGACGCAACACGTTATGCAATGAGTG 3239226 29 100.0 36 ............................. GCTCTGCGATTCGTTCGACCCATCACACATGCACGA 3239291 29 100.0 36 ............................. ATAAAACTCCTCCTTTTGTATTCTCAATTCGACAAA 3239356 29 100.0 39 ............................. GCAGCTAACCCACTCAAACCATCGACTCTTACAAGTTTT 3239424 29 100.0 35 ............................. GGATCTTCTTGAAATCTTCTATCGATTTACCGCTT 3239488 29 100.0 38 ............................. TTGGGTGAAGCATATGCGAAGGCAATGGAAGAAGATGA 3239555 29 100.0 35 ............................. CCAGCTGAATGGCGGTGGAGTAGATGACCAAGAGT 3239619 29 100.0 37 ............................. ATGGCCAAACTTCATAAAATGCCGTGTAATCAGCGTA 3239685 29 100.0 37 ............................. GGCCATCTTAGAATTCAACCTCAACCTTCACTTTCAC 3239751 29 100.0 39 ............................. TTACTATACCGATGGACACATTGAAGTGGTGGATGTAAA 3239819 29 100.0 37 ............................. GTGTACCCGCTTTAACAATTTTGCGTCCTCGTTCATC 3239885 29 100.0 36 ............................. CGGTAGCAGTTTTCATACTTTGGCCATCAAATGTAA 3239950 29 100.0 37 ............................. GGAGTGACAAAAGAATTTACAAGAAGTGGTGAACCAG 3240016 29 100.0 35 ............................. CCCTTTGCCTCCTGTATTTGCTAATATCTAGACAA 3240080 29 100.0 35 ............................. ATGTTAGATGATGTAAAAGAGCGTTTAAAATCATT 3240144 29 100.0 37 ............................. GCGAATTTATTTTAGAATGTGAAACAGCGGGAAATGT 3240210 29 100.0 36 ............................. GATGATTGATTTTACACGTTTTGAGAAGGGGGATTT 3240275 29 100.0 38 ............................. AACATGACCTGCAGTAGCCATCGTATCTTGTTTGGCAT 3240342 29 100.0 35 ............................. TCAAAAAGTTGTGCAAGGACTTCGAGATCGTTCGA 3240406 29 100.0 36 ............................. AATGGATAAGCAATTAAACAATATCGTTGAACAAAA 3240471 29 100.0 35 ............................. TCCGGGTTAATAGCTCAATTGGCTGTTAGGGATAT 3240535 29 100.0 38 ............................. TCGCTTGAATGCTTTCTGAACGCCCTTCCCTTTTCGGC 3240602 29 100.0 36 ............................. TGCAAAATCAAAACTCGGCATGCTAAAGTGGGAGGC 3240667 29 100.0 36 ............................. TTTGAAAAAATGTTTAACAAAGTGTTTTAACTTTAA 3240732 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 53 29 100.0 37 CTTTAAATCCCTCTAAGTTCAGATAAAAC # Left flank : CCATCAATGGATTTTCTCAAATCAGTACTTCCTTTTGCCAAGTAAACTAGTTCAGCTCTTGTACCAACTAACATGTTGATTTCAACGTCCTAACCACTTCTGAAAGAAAGGCCGGATCGAAACCAGGTTTTACTTCAATTGAAATCCCACTAATTTCAATCCGTAATGAATTTTCAACTGTTTGTGAATGATCTTCTAGGGTAACGGATGCCCATTTTGTAGACTTTCCTTGATTTTTTATTGGATTTTCAATTTTTCTTAACCAGTATTTAAACTGGTGAATACTCCATTGATTTTCCTTGCACCAGTTTACTTGAGTTTGACCGCTTTTACGATAGTCAGCGATTCGTTGTTCCCAAACCTTTCGTAATTCAGGATTCTTAGGCATAAAAAAACCTCCTTCAATTTCATCTGGAGGAGATTATCTCATGAAATTAGCACACCAAGAAGGTGTGCAAGATTTGACGCTTACCGTTATTGTATGGCAATTCAAAGAATCT # Right flank : CCCTGCTAAAAAACCCCATAAAATCAATCCTTTAGAGACAAACAAGTGCAGTGAACCTCTAATCGTGCAAACCACAATTTTTGTTTAATCTCTCTAAGCCTTGATATGACAACATTATTACCTGATATCTAAAAAATTAACAAAATGCAATTTAGAAAAACAAATCTAAATCTGCCTTTTCTGCTCCTACATGAAATTTCTTTAAATGTTTTGGATTTTCCACAACATAGTAATAAATACTATCTGTTTCATGATCAATGATTTTCTCCAAATCACGACGACACTTTAAAAATTGTGTCTTTGTCATTTCCCCTTCAAAAACTGAATTTTGTGTCCAATTTAAATATTCTTTTAATTTTTTGCACACTTTATTTACTCGTTTTTCACTTACATCATAAGTTATAATTACGAACATTTGATCACCACCATGCCCTTAGAGGCTTATATGGCGTATCCCCTATGACATGCTTAATCAGTTTATAACATTCTAATCGGATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCCCTCTAAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 3249636-3251824 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018335.1 Ureibacillus thermosphaericus strain A1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3249636 29 100.0 35 ............................. TGTGATTTATGCGTATCAAATGCAATCTTTAATTC 3249700 29 100.0 35 ............................. AATGTAAAAATGAAATCTACTATATCCATTATTAA 3249764 29 100.0 37 ............................. TTTCTCTTTCTATTTGCGTTAGAAATTTTATTTTTAT 3249830 29 100.0 38 ............................. CATTGATCGTTTTAATAATTTCCACTAATTCAAATTAC 3249897 29 100.0 35 ............................. TGCATCCTCGCCATTTGTGCATGTGTTTCTACAAT 3249961 29 100.0 36 ............................. GATTATTCCGGAACGATTAACAATTCAACGCTTGGT 3250026 29 100.0 36 ............................. TATAAAGACGGGATGAACGAAATATCAGAGAACAAT 3250091 29 100.0 37 ............................. GTCCATTTAAAAACTTCAATCACTACAGGCTTTTTAC 3250157 29 96.6 37 C............................ TTTCAACATTTTGTGCAAAGAAAGCTTGTAAATTACT 3250223 29 100.0 35 ............................. GCATATAACGCAGTAGCGCGTAAAGCTTTTGCAGA 3250287 29 100.0 35 ............................. CTTAGTATCCTATATTGGTCAAGCGAGCGGATGGA 3250351 29 100.0 35 ............................. TTGCTTCAAAAGAACTGGGAAAAGATTGGAAGAAA 3250415 29 100.0 35 ............................. TTGCTTCAAAAGAACTGGGAAAAGATTGGAAGAAA 3250479 29 100.0 36 ............................. GAAGTTGAAGATGTAGGTAAGAGTATTACAGAAGAA 3250544 29 100.0 38 ............................. TCATGACCGGCAACAAAAGTTCATCATCAAATGATTTA 3250611 29 100.0 38 ............................. ATTTTCTTAGTATTATTAGAATTCTTGCTTAAATCAAG 3250678 29 100.0 39 ............................. GAGCAAATTTTACACCATATTTATTCAGCTATGATAAAC 3250746 29 100.0 36 ............................. AGCTTCGAGTAAATCGTAGCTTTCTTGACGAATCTC 3250811 29 100.0 36 ............................. TAAATGCTGGCACAATTAAATCGATTACTAAGCCTC 3250876 29 100.0 37 ............................. TGTTATTCGGCAAATTTAAAACGGCTATCTTGAGACC 3250942 29 100.0 38 ............................. GAAAGTACTTGAAAAAAGCAAGGATCTATACATTTTAA 3251009 29 100.0 37 ............................. GTGTATTTGTTGTATTTTGCTTGTACAATGCCTGTTT 3251075 29 100.0 36 ............................. ATCAAGCACCCCATTGAAATCGACGGGGTGCTTATT 3251140 29 100.0 36 ............................. CTTTTTTTCTTGAAGGAGTGATAGCATGAAGGTTAA 3251205 29 100.0 36 ............................. AATGCAATTGCTTTTCCGATATGTTCGTTAAACACA 3251270 29 100.0 36 ............................. GTGTATTGCCATGTGTCTCCGGTTGTTTGATTTGTG 3251335 29 100.0 36 ............................. ATTCCTTTTATTCTTGTTTTTCCATCTTCGGTTTCA 3251400 29 100.0 35 ............................. AACTTCTGTTTGATTGATTCCGGAACACGTTCTTC 3251464 29 100.0 38 ............................. CCTTAATCGTCAAACGTCTTGAAATGGATGGCTTCAAG 3251531 29 100.0 38 ............................. AATGGAATCAAGGAAACAATCGTTTTGAAAAGTAGTGA 3251598 29 100.0 39 ............................. GAATCTTTGTCAAACCAATCTTCCACTTTTGACATTCCA 3251666 29 93.1 35 ..............C.............A ATCACGGTGGAGGAAACGGACGAAGAACTGATCGA 3251730 29 79.3 37 .A.....T............A.....TGA TCAGCTTGATAGCCCAGTGAATCGCAAAACTGTAATC 3251796 29 93.1 0 ..................A......C... | ========== ====== ====== ====== ============================= ======================================= ================== 34 29 98.9 36 GTTTTCTCTGAACTTAGTGGGATTTAAAG # Left flank : AATTGTAAATATAAGTAAGAAAATCTAACCAATATCAATCGATTGTTATTTAGTATATTTTTGTTAAAAAATGTAATTTTATTTGAATTTTGTTGGATTTAAAATTATTTTTAAATTATATTAATCATTTATTTATCTGAATTTAGTAGAAAAGATATATTTATTTCATAATTAAGACGACTCATGTTAACATTCCATGAGTCGTCTTTCATTTAGGAAGCATGCAGCATATTATTCTTAATCTTAATATAGTCAGTTATAATAGAATTAAAACTGAATAAAAGGCTATTGAAATTTTGAAAATTCGCATGCAGTAATTGAAAAGGCAGATTTCGATTGATTTTTCTAAAATGCATTTTGCCAAATTTTGAGATATTGGGTTAAAATGTTGTTATATCAAGGGTTGTAAAGGTTGAGCAAGTAAAAGTAATTCGCACGATTGGACGTTCGCTGCAATGGTTTGTTTCTACATGTTGTTTTTATAAGGTTTTTAGCAAGGG # Right flank : GCCATAAAGCTCCAATTTGAACATTTTTTGATTACTAACTCTGTCCTTTTGAATAACCAAATACTGTAACTACTAATCCGGAAAAAACAATACCAGGAACCAAATAATTATTCCTTTTATTTAGTCAACCAAAATGGAAAAGCAGTGAAATATTACGATGGTTACTCGGAGGAAGAAAAAAGCGTACCATACGATACAATTGCGATTGACTTAGAAACTTTAATTGAAGAAGGGCCACAAGATTGAGCTGCTTAACGTAAAAAGCTAAGCAGCCCAAAAATACAAGTAATATTGTTCATTCAATGATAACAACCGGTTCAAACAACCAATTTCTTGATTTGTAATTATCATCGTCTCTATTTATAACTTCCCGAGTGATGCCATTTTCAATTAACAAATCTCTAAATTTTTTACTCAGAAATACAGGTCTATACGCCCAGCTTCCATTAGATTTCAACTCTTTCATGATATTTATATCTTTAATAGGATATTGTTCAAGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCTGAACTTAGTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //